View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_high_35 (Length: 229)
Name: NF10579_high_35
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 35478076 - 35478276
Alignment:
| Q |
17 |
cacaggtatcacttttgttttatccctagcaagggattaaacatttgcaaatttt-aagtctttttaattttaatggtatgtcattctgaatggtcggtt |
115 |
Q |
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| T |
35478076 |
cacaagtatcacttttgttttatccctagtaagggattaaacatttgcaaatttttaagtcttt--aattttaatggtatgtcattctgaatggtcggtt |
35478173 |
T |
|
| Q |
116 |
cagtagctttaacttctgagttctgatactttaggtcattatatccataacagataatgatatgttacttacaatcggcgtggcatgtggtttgatccct |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
35478174 |
cagtagctttaacttctgagttctgatactttaggtcattatatccataacagataatgatatgttatttacaatcggcgtggcatgttgtttgatccct |
35478273 |
T |
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| Q |
216 |
ttg |
218 |
Q |
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||| |
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| T |
35478274 |
ttg |
35478276 |
T |
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