View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_high_7 (Length: 373)
Name: NF10579_high_7
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 27061495 - 27061182
Alignment:
| Q |
9 |
aacaaaggagatttacattgatcctagatatcatattcatagttatcatgtcactagagcaatttttgaacattgattgcttttatgcacacatgttctt |
108 |
Q |
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| T |
27061495 |
aacaaaagagatttacattgatcctagataatgaattcatagttatcatgtcagtagagcaatttttgaacattgattgcttttatgaacacatgttctt |
27061396 |
T |
|
| Q |
109 |
gtattatcatacaaagttagtttatgtcc-tttattgccctgctccttaccgttttttatggctttgatcagtgcatttgagctggatatatatatggaa |
207 |
Q |
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| T |
27061395 |
gtattatcatacaaagttagtttatgtccttttattgccctgctccttacctttgtttatggctttgatcagtgcatttgagctgg--atatgtatggaa |
27061298 |
T |
|
| Q |
208 |
ctttttgtatgcatgagtaaacaacnnnnnnnnnnnnngataaattcgagttaaagtttttatttttagttgcaactctgagcctgacatctgttttggt |
307 |
Q |
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| T |
27061297 |
ctttttgtatgcatgagtaaacaacttttttttttgttgataaatttgagttaaagtttttatttttagttgc-actctgagcctgacatctgttttggt |
27061199 |
T |
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| Q |
308 |
ggcagccaccgtgtcct |
324 |
Q |
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| T |
27061198 |
ggcagccaccgtgtcct |
27061182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 27384094 - 27383990
Alignment:
| Q |
249 |
aaattcgagttaaagtttttatttttagttgcaactctgagcctgacatctgttttggtggcagccaccgtgtccttgatgaggctgagaggtcattgca |
348 |
Q |
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| T |
27384094 |
aaatttgagttaaagtttttatttttagttgcaa-tctgagcctgacatctgttttggtggcaaccaccatgtacttgataaggctgagaagtaattgca |
27383996 |
T |
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| Q |
349 |
tgatgc |
354 |
Q |
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|||||| |
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| T |
27383995 |
tgatgc |
27383990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 75 - 224
Target Start/End: Complemental strand, 24641910 - 24641762
Alignment:
| Q |
75 |
tgaacattgattgcttttatgcacacatgttcttgtattatcatacaaagttagtttatgtcc-tttattgccctgctccttaccgttttttatggcttt |
173 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24641910 |
tgaacattaattgcttttatgcacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttaccgttttttatggcttc |
24641811 |
T |
|
| Q |
174 |
gatcagtgcatttgagctggatatatatatggaactttttgtatgcatgag |
224 |
Q |
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| T |
24641810 |
gatcgatgcatttgagctgg--atatgtatgttactttttgtatgcatgag |
24641762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 24641731 - 24641665
Alignment:
| Q |
288 |
agcctgacatctgttttggtggcagccaccgtgtccttgatgaggctgagaggtcattgcatgatgc |
354 |
Q |
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| T |
24641731 |
agcctgacatctgtttttgtggcagccaccatgtccttgatgaggctgagagatcattgcatgatgc |
24641665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 46746108 - 46746203
Alignment:
| Q |
262 |
agtttttatttttagttgcaactctgagcct-gacatctgttttggtggcagccaccgtgtccttgatgaggctgagaggtcattgcatgatgcctt |
357 |
Q |
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| T |
46746108 |
agtttttatttttagttgca-ctttcagccttgacgtctgattttgtggcagtcaccatgttcttgatgaagctgagaggtcattgcatgatgcctt |
46746203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 24635028 - 24634982
Alignment:
| Q |
309 |
gcagccaccgtgtccttgatgaggctgagaggtcattgcatgatgcc |
355 |
Q |
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||||||||| | | ||||||||||| ||||||||||||||||||||| |
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| T |
24635028 |
gcagccaccatattcttgatgaggcggagaggtcattgcatgatgcc |
24634982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 14200393 - 14200499
Alignment:
| Q |
89 |
ttttatgcacacatgttcttgtattatcatacaaagttagtttatgtcctt-tattgccctgctccttaccgttttttatggctttgatcagtgcatttg |
187 |
Q |
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||||||||||||| ||| |||||| || |||| ||||| ||||||||||| |||| ||| |||||||||| | ||||| | ||| | ||| |||||||| |
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| T |
14200393 |
ttttatgcacacacgtttttgtatgataatacgaagttgatttatgtccttatatttccccgctccttaccatgttttacgacttcgctcaatgcatttg |
14200492 |
T |
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| Q |
188 |
agctgga |
194 |
Q |
| |
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| ||||| |
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| T |
14200493 |
aactgga |
14200499 |
T |
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