View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_102 (Length: 231)
Name: NF10579_low_102
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_102 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 41483846 - 41484039
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41483846 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
41483945 |
T |
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| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaatgaattattctctcctttt |
212 |
Q |
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| T |
41483946 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaatgaattattctctcctttt |
41484039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 40751052 - 40751245
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
40751052 |
aaggatcatgaaaaatccaggctggaactggaagctcggaggaatgaacttatgtcccgtgagaaggatctacagaagcgtcaagcagataatcacaatg |
40751151 |
T |
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| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaatgaattattctctcctttt |
212 |
Q |
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| T |
40751152 |
agagaaccaagctatattttgagaagaaacatgtaatgtattttggctctttgaatttatggtagcaatgctagatgaataattctctcctttt |
40751245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 41476803 - 41476996
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
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||||||||||||| ||| |||| |||||||||| |||||||||| || |||| |||||||| |||||||||||||||||| ||| |||||||| ||||| |
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| T |
41476803 |
aaggatcatgaaatagctaggcaggaactggaaactcggaggaatgaacttaagtcccgtgaaaaggatctgcagaagcgtcaagcagataatctcaatg |
41476902 |
T |
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| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaatgaattattctctcctttt |
212 |
Q |
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| T |
41476903 |
agagaaacaagctatatcttgagaagaaaaatgtaatgtattttggctctttgagtttatggtagcaatgctaaatgaataattctctcctttt |
41476996 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 41469791 - 41469968
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
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|||||| |||||||||||| || |||| |||||||||||||| |||||||| || ||||| ||||||||||||||| || ||| ||||||| ||| | |
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| T |
41469791 |
aaggattatgaaaaagccattcttcaactagaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcg |
41469890 |
T |
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| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaatga |
196 |
Q |
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||| | |||| ||||||| ||| | |||||||| | ||| |||||| ||||||| |||||||||||||||| |
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| T |
41469891 |
agagaaataagcaatattttcagacgggccatgtaatttcttttagctcttcggatttatggtagcaatgctaaatga |
41469968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 16408986 - 16408850
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
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||||||||||||||||||||||||||||| |||||| ||| || |||||||| |||||||| |||||||||||||||||| ||| |||||||||||||| |
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| T |
16408986 |
aaggatcatgaaaaagccaggctggaactagaagcttggaaaaatgagcttatgtcccgtgaaaaggatctgcagaagcgtcaagcagataatcacaatg |
16408887 |
T |
|
| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaat |
155 |
Q |
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||| | ||||||||| |||||||| |||||||||| |
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| T |
16408886 |
agagaaataagctatatcttgagaagaaacatgtaat |
16408850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 52471933 - 52472101
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
| |
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||||||||||||||||||| | |||||||||||||| ||||||| || ||||| |||||||| | |||||||||||||||| ||||||||||| |||||| |
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| T |
52471933 |
aaggatcatgaaaaagccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatg |
52472032 |
T |
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| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaat |
187 |
Q |
| |
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||| ||||||||| |||||| | |||| ||||| ||||| ||||||| | |||||| ||||||| |
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| T |
52472033 |
agagcaataagctatatcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
52472101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 16413410 - 16413236
Alignment:
| Q |
19 |
aaggatcatgaaaaagccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatg |
118 |
Q |
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|||||||| |||||||||| |||||||||||||| | |||||| || ||||| | || || ||||||||||||||||| ||| ||||||||||| || |
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| T |
16413410 |
aaggatcaagaaaaagccatactggaactggaagcgctgaggaatgaacttatgttacgagaaaaggatctgcagaagcgacaagaagataatcacattg |
16413311 |
T |
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| Q |
119 |
agaaagccaagctatattttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaatgctaaa |
193 |
Q |
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|| | |||||||||||| | | |||||||||| ||||| ||||||| |||||||| ||||||||||||| |
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| T |
16413310 |
tgagaaataagctatattttcaaacaaaacatgtaatttattttagctctttgaatttatggtagcaatgctaaa |
16413236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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