View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_11 (Length: 420)
Name: NF10579_low_11
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 20785187 - 20785572
Alignment:
| Q |
18 |
tgtatgtatattagagcaatagcataataaaacaagaattgctctgcattcaatatattgttc-------gattggttgtactttagaagataatgagaa |
110 |
Q |
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| T |
20785187 |
tgtatgtatattagagcaatagcataataaaacaagaattgctctgcattcaatatattgttcctctgttgattggttgtactttagaagacaatgataa |
20785286 |
T |
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| Q |
111 |
tattgttgcttctgtcgtaaggttattggtcaaaagtgaaccaaaagattatgatcaataatttaggaacaattttggttttataaaacaactgttattt |
210 |
Q |
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| T |
20785287 |
tattgttgcttctgtcgtaaggttat-ggtcaaaagtgaaccaaaagattatgatcaataattaaggaacaattttggttttataaaacaactgttattt |
20785385 |
T |
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| Q |
211 |
gtcggtgtgtatatgatagcagtaatctaagaaaagaagtataattctgcattcatcattttgtttcttagttcttttgctgtacatcagaatatgactt |
310 |
Q |
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| T |
20785386 |
gttggtgtgtatatgatagcagtaatctaagaaaggaagtataattctgcattcatcattttgtttcttagttatttggctgtacatcagaatatgactt |
20785485 |
T |
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| Q |
311 |
ctgcaaggtgttaagacaggactattctatgatataatctcctaaaatttacgtttctataaattatattgattaattctctgtgaa |
397 |
Q |
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| T |
20785486 |
ctgcaaggtgttaaagcaggactattctatgatataatctcctaaaatttacgtttctataaattatattgattaattctctgtgaa |
20785572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 15045661 - 15046046
Alignment:
| Q |
18 |
tgtatgtatattagagcaatagcataataaaacaagaattgctctgcattcaatatattgttc-------gattggttgtactttagaagataatgagaa |
110 |
Q |
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| T |
15045661 |
tgtatgtatattagagcaatagcataataaaacaagaattgctctacattcaatatattgttcctctgttgattggttgtactttagaagacaatgagaa |
15045760 |
T |
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| Q |
111 |
tattgttgcttctgtcgtaaggttattggtcaaaagtgaaccaaaagattatgatcaataatttaggaacaattttggttttataaaacaactgttattt |
210 |
Q |
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| T |
15045761 |
tattgttgcttctgtcgtaaggttat-ggtcaaaagggaaccaaaagattatgatcaatagttaaggaacaattttggttttataaaacaactgttattt |
15045859 |
T |
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| Q |
211 |
gtcggtgtgtatatgatagcagtaatctaagaaaagaagtataattctgcattcatcattttgtttcttagttcttttgctgtacatcagaatatgactt |
310 |
Q |
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| T |
15045860 |
gtcagtgtgtatatgatagcagtaatctaagaaaagaagtataattctgcattcatcattttgtttcttagttctttggctgtacatcagaatatgactt |
15045959 |
T |
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| Q |
311 |
ctgcaaggtgttaagacaggactattctatgatataatctcctaaaatttacgtttctataaattatattgattaattctctgtgaa |
397 |
Q |
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| T |
15045960 |
ctgcaaggtgttaaagcatgactattctatgatataatctcctaaaatttacgtttctataaattatattgattaattctctgtgaa |
15046046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 26288995 - 26288612
Alignment:
| Q |
19 |
gtatgtatattagagcaatagcataataaaacaagaattgctctgcattcaatatattgttc-------gattggttgtactttagaagataatgagaat |
111 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| |||||| ||||||||| |
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| T |
26288995 |
gtatgtatgtcagagcaatagcataataaaacaagaattgctctgcgttcaatatattgttcctctgttgtttggttgtacttcagaagacaatgagaat |
26288896 |
T |
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| Q |
112 |
attgttgcttctgtcgtaaggttattggtcaaaagtgaaccaaaagattatgatcaataatttaggaacaattttggttttataaaacaactgttatttg |
211 |
Q |
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||||| ||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
26288895 |
attgtagcttctgtcataaggttat-ggtcacaagtgaacctaaagattatgatcaataattaaggaacaattttggttttataaaacaaatgttgtttg |
26288797 |
T |
|
| Q |
212 |
tcggtgtgtatatgatagcagtaatctaagaaaagaagtataattctgcattcatcattttgtttcttagttcttttgctgtacatcagaatatgacttc |
311 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||| | ||||||| ||||||||||||| |
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| T |
26288796 |
tcggtgtgtatatgatagcagtaatctaagaagagaagtacaattctgcattcatcattttgtttcttggttctttggttgtacattagaatatgacttc |
26288697 |
T |
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| Q |
312 |
tgcaaggtgttaagacaggactattctatgatataatctcctaaaatttacgtttctataaattata--ttgattaattctctgt |
394 |
Q |
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||||||||||| |||||||||||||| |||| |||||||||| ||| |||||||||||||||| |||||||||||||||| |
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| T |
26288696 |
tgcaaggtgttggagtaggactattctatgttatagtctcctaaaacttatgtttctataaattatattttgattaattctctgt |
26288612 |
T |
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