View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_110 (Length: 216)
Name: NF10579_low_110
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_110 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 13751299 - 13751113
Alignment:
| Q |
11 |
agcaaaggaaagatttgagcatattttatctggttgagtatgtggttgttgcagaagagaaagatgaggaaagtcacagaacaataaaacccatttttaa |
110 |
Q |
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| T |
13751299 |
agcaaaagaaagatttgagcatattttatctggttgagtatgtggttgttgcagaagagaaagatgaggaaagtcacaaaacaataaaacccatttttaa |
13751200 |
T |
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| Q |
111 |
tagagaaattttaaaaagtaaaataagtgcttagatatggtacttgtgtttgagcaaaaaatttcttttggtgattattagaagtgg |
197 |
Q |
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| T |
13751199 |
tagagaaattttaaaatgtaaaataagtgcttaggtatggtacttgtgtttgagcaaaaattttcttttggtgattattagaagtgg |
13751113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 13748566 - 13748401
Alignment:
| Q |
18 |
gaaagatttgagcatattttatctggttgagtatgtggttgttgcagaagagaaagatgaggaaagtcacagaacaataaaaccca-tttttaatagaga |
116 |
Q |
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| T |
13748566 |
gaaagatttgagcatatgttatctggttgagtaaggggttgttgcagaagagaaagatgaggaaagtcaaagaactataaaacctattttttaatagag- |
13748468 |
T |
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| Q |
117 |
aattttaaaaagtaaaataagtgcttagatatggtacttgtgtttgagcaaaaaatttcttttggtgattattagaagtgg |
197 |
Q |
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| T |
13748467 |
--------------aaataagtgtttaggtatggtacttgtgtttgagcaaaaaaattattttggtaattattagaagtgg |
13748401 |
T |
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