View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_111 (Length: 215)
Name: NF10579_low_111
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_111 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 170424 - 170601
Alignment:
| Q |
18 |
aaagagagaagctagtatgctttatagtcatctttgtaatacttaattttttcaatatttactttcattcaattatcttgttggcatatatatatttctc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
170424 |
aaagagagaagctagtatgctttatagtcatctttgtaatacttaattttttcaatatttactttcattcaattatcttgttggcatagatatatt--tc |
170521 |
T |
|
| Q |
118 |
tgttttaagtgggcggtgggcactaagatctggtgatctaccattataggtggagcaactgcataaaatcttcaagctct |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
170522 |
tgttttaagtgggcggtgggcactaagatctggtgatctaccattatagttggagcaactgcataaaatcttcaagctct |
170601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University