View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_115 (Length: 204)
Name: NF10579_low_115
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_115 |
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| [»] scaffold1961 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 15197041 - 15197214
Alignment:
| Q |
14 |
cataggaatacaaccttaaatccaagtacttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccc |
113 |
Q |
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| T |
15197041 |
cataggaatacaaccttaaatccaactacttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccc |
15197140 |
T |
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| Q |
114 |
taaatccaatgataatattttaaaagacaggcacagtgaacacaaataagaatgatgagaaagaacctgtaaag |
187 |
Q |
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| T |
15197141 |
taaatccaatgataatattttaaaagacaggcacagtgaacacaaataagaatgatgagaaagaacctgtaaag |
15197214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 15217459 - 15217632
Alignment:
| Q |
14 |
cataggaatacaaccttaaatccaagtacttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccc |
113 |
Q |
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| T |
15217459 |
cataggaatacaaccttaaatccaactacttaattatgaaaataagctaacaacaatagacatatcatcatcattaccaacttgataatttaaaaaaccc |
15217558 |
T |
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| Q |
114 |
taaatccaatgataatattttaaaagacaggcacagtgaacacaaataagaatgatgagaaagaacctgtaaag |
187 |
Q |
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| T |
15217559 |
taaatccaatgataatattttaaaagacaggcacagtgaacacaaataagaatgatgagaaagaacctgtaaag |
15217632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1961 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1961
Description:
Target: scaffold1961; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 1102 - 1138
Alignment:
| Q |
151 |
gaacacaaataagaatgatgagaaagaacctgtaaag |
187 |
Q |
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| T |
1102 |
gaacacaaatgagaatgatgagaaagaacctgtaaag |
1138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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