View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_118 (Length: 201)

Name: NF10579_low_118
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_118
NF10579_low_118
[»] chr3 (19 HSPs)
chr3 (19-192)||(2659548-2659721)
chr3 (95-191)||(2476183-2476279)
chr3 (28-191)||(2501645-2501805)
chr3 (19-191)||(2644765-2644937)
chr3 (19-191)||(9595051-9595220)
chr3 (92-189)||(7443412-7443509)
chr3 (19-190)||(9562386-9562554)
chr3 (95-187)||(2630867-2630959)
chr3 (94-191)||(2474651-2474747)
chr3 (95-189)||(9566246-9566343)
chr3 (95-191)||(2635220-2635316)
chr3 (148-191)||(2491681-2491724)
chr3 (95-191)||(7334690-7334786)
chr3 (93-191)||(679632-679730)
chr3 (137-190)||(755025-755078)
chr3 (96-185)||(7324843-7324932)
chr3 (93-191)||(747550-747648)
chr3 (22-72)||(7324950-7325000)
chr3 (147-187)||(13497789-13497829)
[»] chr1 (2 HSPs)
chr1 (145-191)||(51829302-51829348)
chr1 (153-190)||(51381898-51381935)
[»] chr6 (1 HSPs)
chr6 (147-191)||(9820340-9820384)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 2659721 - 2659548
Alignment:
Q  19 ctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgatgatgtgctcttgcgatggcatattttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  2659721 ctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatcactgcatcgacctgatgatgagctcttgcgatggcatattttg 2659622  T
Q  119 tggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttgc 192  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2659621 tggtaagctcaataatggttcttatttcttatggaacccttccattagaaagtttaagttattgcctcctttgc 2659548  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 2476183 - 2476279
Alignment:
Q  95 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||    
T  2476183 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaaatttcagctattgcctcctttg 2476279  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 2501645 - 2501805
Alignment:
Q  28 ttacacaaacacaactttacattcctaatactctcacaaatggacattactgcat-cgacctgatgatgtgctcttgcgatggcatattttgtggtaagc 126  Q
    ||||||||||||||||  ||||||||| |||||||||||||||| || |  || | || |    |||| ||||||||||||||| | ||||||||| |||    
T  2501645 ttacacaaacacaactacacattcctagtactctcacaaatggaaatcatggcgtgcgtc----tgatttgctcttgcgatggcgtgttttgtggtcagc 2501740  T
Q  127 tcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2501741 tcaataatgattcttatttcttgtggaacccttccattacaaagtttaagttattgcctcctttg 2501805  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 2644937 - 2644765
Alignment:
Q  19 ctaccgttgttacacaaacacaactttacattcctaata---ctctcacaaatggacattactgcatcgacctgatgatgtgctcttgcgatggcatatt 115  Q
    ||||| ||||||||||||||||||||||| |||||| ||   |||||||||| ||||||  ||| || | |||| ||   ||||||||||| ||| | ||    
T  2644937 ctaccattgttacacaaacacaactttaccttcctactagtactctcacaaacggacatctctggatgggcctgctg---tgctcttgcgacggcgtgtt 2644841  T
Q  116 ttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2644840 ttgtggtcagctcaatgatgattcttatttcttgtggaacccttccgttagaaagtttaagttattgcctcctttg 2644765  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 9595220 - 9595051
Alignment:
Q  19 ctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgatgatgtgctcttgcgatggcatattttg 118  Q
    ||||| |||||||||| ||||||||||||  ||||||||||||||||||||||  | | | | | ||| | ||  ||||||||||||||||||| |||||    
T  9595220 ctaccattgttacacagacacaactttaccctcctaatactctcacaaatggatctaaatacgtggacgt-at--tgtgctcttgcgatggcattttttg 9595124  T
Q  119 tggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    | ||   |||||   |||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||    
T  9595123 ttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttattgcctcctttg 9595051  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 7443509 - 7443412
Alignment:
Q  92 gatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctt 189  Q
    ||||||||||||||||||||||||||| ||| ||||||||  ||||| || |||  ||||||||||||||||| |||||||||||||||| |||||||    
T  7443509 gatgtgctcttgcgatggcatattttgcggtgagctcaatcttggttattgttttgtgtggaacccttccattcgaaagtttaagttattacctcctt 7443412  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 9562554 - 9562386
Alignment:
Q  19 ctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgatgatgtgctcttgcgatggcatattttg 118  Q
    |||||| ||||||||| ||||||||||||  |||||||| ||||||||||  || | ||| |  |||||  |  ||||||| || ||| |||||| ||||    
T  9562554 ctaccgctgttacacagacacaactttacgctcctaatattctcacaaatccacgtaacttcc-cgaccgta--atgtgctgttccgaaggcatactttg 9562458  T
Q  119 tggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccttt 190  Q
    |||| ||||||||  |||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||    
T  9562457 tggtcagctcaatcttggttcttattttttgtacaacccttccattagaaaatttaagttattgcctccttt 9562386  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 2630867 - 2630959
Alignment:
Q  95 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 187  Q
    |||||||||||||||||| ||||  |||| | ||  | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2630867 gtgctcttgcgatggcatctttttgggtatgttctctcatacttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 2630959  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 94 - 191
Target Start/End: Original strand, 2474651 - 2474747
Alignment:
Q  94 tgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    |||||||||| |||||||| ||||| || | ||||||  |||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  2474651 tgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcctcctttg 2474747  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 9566343 - 9566246
Alignment:
Q  95 gtgctcttgcgatggcatattttgtggtaagctcaataat---ggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctt 189  Q
    |||||||||||||||||| ||||||||| ||||||||  |   |||| |||||| |||||||||||||| ||||| || |||||||||||||||||||    
T  9566343 gtgctcttgcgatggcatcttttgtggtgagctcaatcttcttggttgttattttttgtggaacccttctattaggaaatttaagttattgcctcctt 9566246  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 95 - 191
Target Start/End: Original strand, 2635220 - 2635316
Alignment:
Q  95 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    |||||||||||||||||| ||| | |||  ||||||   ||||||||||||  |||||||||||||||||||||| | |||||||||||| ||||||    
T  2635220 gtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaaatgtaagttattgccccctttg 2635316  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 2491681 - 2491724
Alignment:
Q  148 tgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2491681 tgtggaacccttccattagaaagtttaagttattgcctcctttg 2491724  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 191
Target Start/End: Complemental strand, 7334786 - 7334690
Alignment:
Q  95 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||| |||||||||||| |||||  || | ||| | |||| ||||||||| |||||||||||||||||||  ||  ||||||||||||||||||||    
T  7334786 gtgctgttgcgatggcatcttttgctgttatctcgaaaatgattcttattttttgtggaacccttccattaacaaagttaagttattgcctcctttg 7334690  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 679730 - 679632
Alignment:
Q  93 atgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    |||||||||||||||||||| |||||  | | ||| ||   |||||||||||| |||||||| |||||| ||||||||| ||||||| | |||||||||    
T  679730 atgtgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttgttgtggaatccttccgttagaaagtataagttactccctcctttg 679632  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 755078 - 755025
Alignment:
Q  137 ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctccttt 190  Q
    ||||||||| |||||||| |||||||||| ||| ||||||||||||||||||||    
T  755078 ttcttattttttgtggaatccttccattacaaaatttaagttattgcctccttt 755025  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 7324932 - 7324843
Alignment:
Q  96 tgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcct 185  Q
    |||||||| |||||||| ||||  || | ||||||   |||||||||||  |||||||||||||||||||| || |||||||||||||||    
T  7324932 tgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattaggaaatttaagttattgcct 7324843  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 747648 - 747550
Alignment:
Q  93 atgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||| |||||||||||||| |||||  | | ||| ||   |||||| ||||| |||||||| |||||||||||||||| || |||| | |||||||||    
T  747648 atgtgatcttgcgatggcatcttttgctgcatgctaaaagctggttcatatttgttgtggaatccttccattagaaagtatacgttacttcctcctttg 747550  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 7325000 - 7324950
Alignment:
Q  22 ccgttgttacacaaacacaactttacattcctaatactctcacaaatggac 72  Q
    ||||| ||||||||||||||||  ||||| ||| |||||||||||||||||    
T  7325000 ccgtttttacacaaacacaactacacatttctagtactctcacaaatggac 7324950  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 13497789 - 13497829
Alignment:
Q  147 ttgtggaacccttccattagaaagtttaagttattgcctcc 187  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  13497789 ttgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 51829302 - 51829348
Alignment:
Q  145 tcttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||||| ||||||||||| ||||| |||||| ||||||||||||||    
T  51829302 tcttgtgcaacccttccatcagaaaatttaagatattgcctcctttg 51829348  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 51381935 - 51381898
Alignment:
Q  153 aacccttccattagaaagtttaagttattgcctccttt 190  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  51381935 aacccttccattagaaaatttaagatattgcctccttt 51381898  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 9820384 - 9820340
Alignment:
Q  147 ttgtggaacccttccattagaaagtttaagttattgcctcctttg 191  Q
    ||||||||||||||||||||||| | |||  ||||||||||||||    
T  9820384 ttgtggaacccttccattagaaaatataacatattgcctcctttg 9820340  T

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