View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_12 (Length: 420)
Name: NF10579_low_12
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 33918490 - 33918895
Alignment:
| Q |
1 |
cagctgagatatctacaccatcatgtattgccatgtcaaatgctttgaggatatcagcaccgtccaacaggaacgtcccagcaagctttgtagatagcca |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33918490 |
cagctgagatatctacaccatcatgtatagccatgtcaaatgctttgaggatatcagcatcgtccaacaggaacgtcccagcaagctttgtagatagcca |
33918589 |
T |
|
| Q |
101 |
aatgagctaaggtagctcctcctcttgctaaaccagaagcaagcaagtcctcaataatttgcattttttacaaaatatccagctgatgttgaagctgtgt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33918590 |
aatgagctaaggcagctcctcctcttgctaaaccagaagtaagcaagtcctctataatttgcattttttacaaaatatccagct-atgttgaagctgtgt |
33918688 |
T |
|
| Q |
201 |
gagatccatggccagtagcatctctggttgagagatattctgaagtgtcggtgtttccgaggatcaaggatgaggttcttagtgtgatcagtcattcctt |
300 |
Q |
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| T |
33918689 |
gagatccatggccagtagcatctctggttgagagatattctgaagtgtcggtgtttc-------caaggatgaggttcttagtgtgatcagtcattcctt |
33918781 |
T |
|
| Q |
301 |
ttaggaagcatctagcaccaattatcttcttgttgcagtttgtggagtagagttgaaattttctctaacttgacaaactcctttccactttgatggaatg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918782 |
ttaggaagcatctagcaccaattatcttcttgttgcagtttgtggagtagagttgaaattttctctaacttgacaaactcctttccactttgatggaatt |
33918881 |
T |
|
| Q |
401 |
tttccctttgcttc |
414 |
Q |
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| T |
33918882 |
tttcccattgcttc |
33918895 |
T |
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Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 35082914 - 35082519
Alignment:
| Q |
11 |
atctacaccatcatgtattgccatgtcaaatgctttgaggatatcagcacc--------gtccaacaggaacgtcccagcaagctttgtagatagccaaa |
102 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
35082914 |
atctacaccatcgtgtatagccatgtcaaatgctttgaggatatcagcatcagtacagtgtccaacaggaacgtcccagcaagctttgtagatagccaag |
35082815 |
T |
|
| Q |
103 |
tgagctaaggtagctcctcctcttgctaaaccagaagcaagcaagtcctcaataatttgcattttttacaaaatatccagctgatgttgaagctgtgtga |
202 |
Q |
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|||||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
35082814 |
tgagctaaaggtgctcctcctcttgctaaaccagaagcaagg----cctctataatttgcattttctacaaaatatccagctgctgttgaagctgtgtga |
35082719 |
T |
|
| Q |
203 |
gatccatggccagtagcatctctggttgagagatattctgaagtgtcggtgtttccgaggatcaaggatgaggttcttagtgtgatcagtcattcctttt |
302 |
Q |
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| T |
35082718 |
gttccatggccaatagcatctctagctgagagatattctgtagtgtcattgtttc-------caaggacgaggttcttagtgtgatcagttattcctttt |
35082626 |
T |
|
| Q |
303 |
aggaagcatctagcaccaattatcttcttgttgcagtttgtggagtagagttgaaattttctctaacttgacaaactcctttccactttgatggaatgtt |
402 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||| || |
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| T |
35082625 |
aggaaccatctagcaccaattatcttcttgttgcagtttgtg-----gagttaaatttttcaccaacttgacaaactcctttccactttgatggaatttt |
35082531 |
T |
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