View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_13 (Length: 413)
Name: NF10579_low_13
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_13 |
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| [»] scaffold0024 (1 HSPs) |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 3180450 - 3180842
Alignment:
| Q |
18 |
caatcttgctaaaactgagaacaggaacaaaactcatatggcattctctttattaacaccctttttggaatgagtttgtatataatcac---atgtccac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
3180450 |
caatcttgctaaaactgagaacaggaacaaaactcatatggcattctctttattaacaccctttttggaatgagtttgtatataatcactatatgtccac |
3180549 |
T |
|
| Q |
115 |
tggattactgcaatctattatgcttgtgattcaatttgaccttttttagcctattggagaaataaaaggtgaaatctctatcacaacttcacttgatagt |
214 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3180550 |
tgggttactgcaatctattatgcttgtgattcaacttgaccttttttagcctattggagaaataaaaggtgaaatctctatcacaacttcacttgatagt |
3180649 |
T |
|
| Q |
215 |
tatttcattcatctgccatatcttg-----------------ctcctcagaggtatgttttcctgtataattgtgagcatcatttgtcatgatctctatt |
297 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3180650 |
tatttcattcatctgccatatcttgctcctcaggggataggtctcctcagaggtatgttttcctgtataattgtgagcatcatttgtcatgatctctatt |
3180749 |
T |
|
| Q |
298 |
gcactgacacttctgattgaaggtgtgtcccggaatcataacctatgtcattttcttaaagttttatcattgtagacgtgtcagtgtcgtgtc |
390 |
Q |
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| T |
3180750 |
gcactgacacttctgattgaacgtgtgtcccggaatcataacctatgtcattttcttaaaattttatcattgtagacgtgtcagtgtcctgtc |
3180842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 43 - 246
Target Start/End: Complemental strand, 20959862 - 20959650
Alignment:
| Q |
43 |
aacaaaactcatatggcattctctttattaacaccctttttggaatgagtttgtatata--atcac-atgtccactggattactgcaatctattatgctt |
139 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |
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| T |
20959862 |
aacaaaactcatatggcattctctttgttaacacc--ttttgaaacgagtttgtatatataatcactatgtccacttgattactgcaatctattatgctt |
20959765 |
T |
|
| Q |
140 |
gtgattcaatttgaccttttttagcctattggagaaataaaaggtgaaatctctatc-acaact-------tcacttgatagttatttcattcatctgcc |
231 |
Q |
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|| ||||||||| |||||| | |||||||||||| |||| |||||||||||||||| || || ||||||| |||||||||| ||||| |||| |
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| T |
20959764 |
ttggttcaatttgtccttttgttgcctattggagatataagaggtgaaatctctatcaacttctctatcactcacttggtagttatttctttcatttgcc |
20959665 |
T |
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| Q |
232 |
atatcttgctcctca |
246 |
Q |
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||||||||||||||| |
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| T |
20959664 |
atatcttgctcctca |
20959650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 244 - 370
Target Start/End: Complemental strand, 20946682 - 20946556
Alignment:
| Q |
244 |
tcagaggtatgttttcctgtataattgtgagcatcatttgtcatgatctctattgcactgacacttctgattgaaggtgtgtcccggaatcataacctat |
343 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||| |||||||| |||||||||||| ||||||||| ||| |
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| T |
20946682 |
tcagaggtatgttttcctctataattgtgagcatcatttgttatgatatctattgcaccgacgcttctgatctaaggtgtgtcccaaaatcataacttat |
20946583 |
T |
|
| Q |
344 |
gtcattttcttaaagttttatcattgt |
370 |
Q |
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|||||||||| ||| |||||||||||| |
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| T |
20946582 |
gtcattttctcaaaattttatcattgt |
20946556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 25956563 - 25956525
Alignment:
| Q |
291 |
ctctattgcactgacacttctgattgaaggtgtgtcccg |
329 |
Q |
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||||||||||| |||||||||||||||||| |||||||| |
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| T |
25956563 |
ctctattgcacggacacttctgattgaaggcgtgtcccg |
25956525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 329
Target Start/End: Complemental strand, 26178610 - 26178564
Alignment:
| Q |
283 |
gtcatgatctctattgcactgacacttctgattgaaggtgtgtcccg |
329 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
26178610 |
gtcatgatctctgatgcacggacacttctgattgaaggtatgtcccg |
26178564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 785384 - 785420
Alignment:
| Q |
291 |
ctctattgcactgacacttctgattgaaggtgtgtcc |
327 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |
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| T |
785384 |
ctctgttgcacggacacttctgattgaaggtgtgtcc |
785420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 34197235 - 34197199
Alignment:
| Q |
291 |
ctctattgcactgacacttctgattgaaggtgtgtcc |
327 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
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| T |
34197235 |
ctctattgcactgacacttctagttgaaggtgtgtcc |
34197199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 330
Target Start/End: Original strand, 39619047 - 39619081
Alignment:
| Q |
296 |
ttgcactgacacttctgattgaaggtgtgtcccgg |
330 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
39619047 |
ttgcacggacacttctgattgaaggtgtgtcccgg |
39619081 |
T |
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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 18137 - 18194
Alignment:
| Q |
341 |
tatgtcattttcttaaagttttatcattgtagacgtgtcagtgtcgtgtctgatgtcc |
398 |
Q |
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||||| ||||||| ||| ||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
18137 |
tatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgtcc |
18194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 10247 - 10283
Alignment:
| Q |
291 |
ctctattgcactgacacttctgattgaaggtgtgtcc |
327 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |
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|
| T |
10247 |
ctctcttgcacagacacttctgattgaaggtgtgtcc |
10283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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