View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_14 (Length: 397)
Name: NF10579_low_14
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 38496974 - 38496613
Alignment:
| Q |
15 |
caaaggcttgagagaaacccaatatataagtgttgcacctaacctctttgctagctctagaaagatcaccaactatatatagagaagaaaagggagaagg |
114 |
Q |
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| T |
38496974 |
caaaggcttgagagaaacccactatataagt--tgcacctaacctctttgctagctctagaaagatcaccaactatatatagagaagaaaagggagaagg |
38496877 |
T |
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| Q |
115 |
atagagagatcataagaagaagtgatgtcccaaattattgaccaccacttatttgaggaggagaatcagatttccacacaaatggggttcattcctttcc |
214 |
Q |
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| T |
38496876 |
atagagagatcataagaagaagtgatgtcccaaattattgaccaccacttatttgaggaggagaatcagatttccacacaaatggggttcattcctttcc |
38496777 |
T |
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| Q |
215 |
caacaaaccttactttcccttctttagattgcaatcaatctttgaaagccttcagttccatagcttcttcacttacatctgaatcagattctacatcaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496776 |
caacaaaccttactttcccttctttagattgcaatcaatctttgaaagccttcagttccatagcttcttcacttacatctgaatcagattctacatcaaa |
38496677 |
T |
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| Q |
315 |
cctaacacaaaccctactcacaaccaatcctcaaaaatcaaaagaatacctcacttctagcttt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38496676 |
cctaacacaaaccctactcacaaccaatcctcaaaaatcaaaagaatacctcacttctagcttt |
38496613 |
T |
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