View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_15 (Length: 391)
Name: NF10579_low_15
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_15 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 21)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 33644608 - 33644971
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644608 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
33644707 |
T |
|
| Q |
119 |
tgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644708 |
tgaaataccaagttggatcaacaatcaaagtgtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
33644807 |
T |
|
| Q |
219 |
gtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattatggaactagttttacctaagaattcctatatgaattttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644808 |
gtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattatggaactagttttacctaagaattcctatatgaattttt |
33644907 |
T |
|
| Q |
319 |
ggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
382 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644908 |
ggagaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
33644971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 33304424 - 33304196
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
118 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||| |||||||| |||||||||||| || | ||||||| ||| ||||||||| |||||||||| |
|
|
| T |
33304424 |
gcagtagcatgacattttcatggttgacacaattcattgaggcaaactcacaatcctaccctacgtcctttgattggattcaaattgttactccaggaaa |
33304325 |
T |
|
| Q |
119 |
tgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
218 |
Q |
| |
|
||||||||||| ||||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
33304324 |
tgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaatagaccgatctcctattatgcatgacaataacaattatatcattggcttt |
33304225 |
T |
|
| Q |
219 |
gtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
|||||||||| |||||| |||||||||| |
|
|
| T |
33304224 |
ctatgttgtgcggtattttccatggcacc |
33304196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 33388094 - 33387870
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
118 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||| ||| ||||||||| |||| ||||||| |||| ||||||| || ||||||||| ||| ||||||| |
|
|
| T |
33388094 |
gcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgacaaacctaccctgcctattttgatacgattcaaattgttactacaggaag |
33387995 |
T |
|
| Q |
119 |
tgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
218 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33387994 |
tgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaatagacaaattgcctattatgcatgacaataacaataatatcattggcttt |
33387895 |
T |
|
| Q |
219 |
gtatgttgtgcagtatttaccatgg |
243 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
33387894 |
ctatgttgtgcagtatttacaatgg |
33387870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 9166692 - 9166473
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||||||||| || |||| || |||||||||| ||||||||| || ||||||| |
|
|
| T |
9166692 |
gcagtagcatgacattttcatggatgatgcaatttattcaggcaaacccaccatcccac---------tttgataggattcaaattgttacgccaggaat |
9166602 |
T |
|
| Q |
119 |
tgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| || ||| |||| ||||||| | ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9166601 |
tgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaatagacctaactcctattatgcatgacaataacaataatatcattggcttt |
9166502 |
T |
|
| Q |
219 |
gtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||||||||||| |||||||||| |
|
|
| T |
9166501 |
gtatgttgtgcagtattctccatggcacc |
9166473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 33262566 - 33262338
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
118 |
Q |
| |
|
|||| ||||||||||||||||||| || |||||||||||| ||| ||| |||||||||||| || || || ||| | ||||||||| | |||||||| |
|
|
| T |
33262566 |
gcagtagcatgacattttcatggacgacacaattcattcaagcataccaacaatcctaccctacttatttggatgagtttcaaattgttagtccaggaaa |
33262467 |
T |
|
| Q |
119 |
tgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||| | ||||| || |||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
33262466 |
tgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagtagaccaaactcctattatgcatgataataacaataatatcattggcttt |
33262367 |
T |
|
| Q |
219 |
gtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||| |||||| ||||| |||| |
|
|
| T |
33262366 |
ctatgttgtgttgtattttccatgacacc |
33262338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 28870242 - 28870446
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaa |
123 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| |||| ||| ||||||||||| ||| || ||| | | | ||||| |||||||||||||||| |
|
|
| T |
28870242 |
agcatggcattttcatggatgaaacaattcattcgggcataccgacaatcctaccttgtctatttggatgcgtttaatattgttactccaggaagtgaaa |
28870341 |
T |
|
| Q |
124 |
taccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatg |
223 |
Q |
| |
|
||||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
28870342 |
taccaagttggattaacaatcagagcatgggtggttcaatacaaatagacgaatctcctattataaatgacaataacaataatatcattggctttgtatg |
28870441 |
T |
|
| Q |
224 |
ttgtg |
228 |
Q |
| |
|
||||| |
|
|
| T |
28870442 |
ttgtg |
28870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 33285537 - 33285306
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactt---tgataggactcaaattgtaactccagg |
115 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||| |||||| ||| ||| | ||||| | | ||| ||| ||| ||| ||||| |||||||| |
|
|
| T |
33285537 |
gcagtagcatggcattttcatggatgatacaattcatccaggcataccaacacttttaccctgcgtccttatttgaagggattcatattgttactccagg |
33285438 |
T |
|
| Q |
116 |
aagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattgga |
215 |
Q |
| |
|
||||||||||||||||||||| || ||||| || |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33285437 |
aagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatagacagatctcctattatgcatgacaataacaataatatcattggc |
33285338 |
T |
|
| Q |
216 |
tttgtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| |
|
|
| T |
33285337 |
tttgtatgttgtgcagtgttttccgtggcacc |
33285306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 31562892 - 31563109
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||| | | ||| |||||||| |||| || ||| | ||| ||||| ||||||||| |
|
|
| T |
31562892 |
gcaggagcatgacattttcatggatggcacaattcattaaggcatatccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaag |
31562991 |
T |
|
| Q |
119 |
tgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggattt |
218 |
Q |
| |
|
||||||||| | ||||||||||||||| || ||||||||||||||| |||||| |||||| |||||||||||||| |||| |||||||||| ||| |
|
|
| T |
31562992 |
tgaaataccgaattggatcaacaatcatagcatgggtgattcaataccaatagagttctctcctcctatgcatgacaatatcaatgatatcattggcttt |
31563091 |
T |
|
| Q |
219 |
gtatgttgtgcagtattt |
236 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
31563092 |
gtatgttgtgcagtattt |
31563109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 110 - 247
Target Start/End: Complemental strand, 33057427 - 33057290
Alignment:
| Q |
110 |
tccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
33057427 |
tccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaatagaccgatctcctattaggcatgacaatgacaataatatc |
33057328 |
T |
|
| Q |
210 |
attggatttgtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
33057327 |
attggtattgtatgttgtgcagcatttacgatggcacc |
33057290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 98 - 247
Target Start/End: Complemental strand, 33409839 - 33409690
Alignment:
| Q |
98 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaat |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||| || ||||||||| |||| |||||||| |
|
|
| T |
33409839 |
tcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaattgatgaatctcctgttataaatgacaat |
33409740 |
T |
|
| Q |
198 |
aacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| | || || |||||||||| |
|
|
| T |
33409739 |
aacaataatattattggctttgtaagttgtgtattaatttccatggcacc |
33409690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 97 - 243
Target Start/End: Complemental strand, 33398934 - 33398788
Alignment:
| Q |
97 |
ctcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaa |
196 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| || |
|
|
| T |
33398934 |
ctcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgtgtgggtgattcaatacaaatagacctatctcctgctatgcatgataa |
33398835 |
T |
|
| Q |
197 |
taacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
243 |
Q |
| |
|
||||||| | | | | |||||||||||||||||||||||||||| |
|
|
| T |
33398834 |
taacaatcagagccattactttgtatgttgtgcagtatttaccatgg |
33398788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 176 - 379
Target Start/End: Complemental strand, 33358716 - 33358513
Alignment:
| Q |
176 |
atctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgacc |
275 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||| | | | || ||||| ||| | || |
|
|
| T |
33358716 |
atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctcagcatgggtattttccaccgtggtcc |
33358617 |
T |
|
| Q |
276 |
attatggaactagttttacctaagaattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtc |
375 |
Q |
| |
|
|||||||||| |||| ||| ||||| ||| | ||| ||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
33358616 |
cttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattctcaatggaggtcttattacgcccaaatcaagtc |
33358517 |
T |
|
| Q |
376 |
acct |
379 |
Q |
| |
|
|||| |
|
|
| T |
33358516 |
acct |
33358513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 33271648 - 33271582
Alignment:
| Q |
106 |
taactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaataga |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| |||||| |
|
|
| T |
33271648 |
taactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgattcgataccaataga |
33271582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 33358836 - 33358714
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattca----ggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccag |
114 |
Q |
| |
|
|||| ||||||||| |||||||||||| |||||||||||| |||||||| || ||||||||| ||| ||| |||| | |||||| || ||||||| |
|
|
| T |
33358836 |
gcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaaatagttactccag |
33358737 |
T |
|
| Q |
115 |
gaagtgaaataccaagttggatc |
137 |
Q |
| |
|
|||||||||| | |||||||||| |
|
|
| T |
33358736 |
gaagtgaaatgctaagttggatc |
33358714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 321 - 382
Target Start/End: Complemental strand, 33387810 - 33387749
Alignment:
| Q |
321 |
aaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
382 |
Q |
| |
|
||||| ||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
33387810 |
aaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatg |
33387749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 33398994 - 33398939
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcc |
74 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||| || | ||||||| |
|
|
| T |
33398994 |
gcagtagcatgacattttcatggatgatacaattcattctggccaatccacaatcc |
33398939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 33057506 - 33057459
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacc |
66 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||||||| ||||||||| |
|
|
| T |
33057506 |
gcaggagcatgacacttttatggatgaaacaattcattaaggcaaacc |
33057459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 33271726 - 33271679
Alignment:
| Q |
19 |
gcaggagcatgacattttcatggatgatacaattcattcaggcaaacc |
66 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33271726 |
gcagtagcttgacattttcatggatgatacaattcattatggcaaacc |
33271679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 28870548 - 28870594
Alignment:
| Q |
336 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
382 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
28870548 |
gtaattatcgatagagatcttattacgaccaaatcaagtcacctatg |
28870594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 352 - 382
Target Start/End: Complemental strand, 33271447 - 33271417
Alignment:
| Q |
352 |
gtcttattacgaccaaatcaagtcacctatg |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33271447 |
gtcttattacgaccaaatcaagtcacctatg |
33271417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 336 - 382
Target Start/End: Complemental strand, 33304119 - 33304073
Alignment:
| Q |
336 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
382 |
Q |
| |
|
||||||||| |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
33304119 |
gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatg |
33304073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 579 - 356
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaa |
123 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |||||||||| | || || || | ||||||||| |||||||||||||||| |
|
|
| T |
579 |
agcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaa |
480 |
T |
|
| Q |
124 |
taccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatg |
223 |
Q |
| |
|
||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
479 |
taccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtatt |
380 |
T |
|
| Q |
224 |
ttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
379 |
ttgtgcagtattttgcatggcacc |
356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 24 - 247
Target Start/End: Complemental strand, 6325 - 6102
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaa |
123 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||| |||||||||| | || || || | ||||||||| |||||||||||||||| |
|
|
| T |
6325 |
agcataacattttcatggatgaaacaattcattcaggcaaaccaacaatcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaa |
6226 |
T |
|
| Q |
124 |
taccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatg |
223 |
Q |
| |
|
||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||| |||| ||||||||||| |||||||||||||| ||||||| |
|
|
| T |
6225 |
taccaagctggatcaacaatcagagcatgggtggttcaatactaatagacgaatctcctgttatacatgacaataagaataatatcattggctttgtatt |
6126 |
T |
|
| Q |
224 |
ttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
6125 |
ttgtgcagtattttgcatggcacc |
6102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 31472625 - 31472835
Alignment:
| Q |
26 |
catgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaata |
125 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | |||||||| ||| || | ||||| | ||| ||||| |||||||||||||||||| |
|
|
| T |
31472625 |
catgacattttcatggatgatacaactcattcaggcaaatccacaatccttccctgactgttatgatataattcagattgttactccaggaagtgaaata |
31472724 |
T |
|
| Q |
126 |
ccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgtt |
225 |
Q |
| |
|
||||||||| |||||||||| | ||||||||| |||| | ||||| |||||| |||||||||||||||||||||||||||||||| | | |||||| |
|
|
| T |
31472725 |
ccaagttggttcaacaatcagaacaagggtgattcgatacgattagactcatctcccattatgcatgacaataacaataatatcattggttgtatatgtt |
31472824 |
T |
|
| Q |
226 |
gtgcagtattt |
236 |
Q |
| |
|
||| ||||||| |
|
|
| T |
31472825 |
gtgtagtattt |
31472835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 31479081 - 31479293
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || || || || ||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
31479081 |
agcatgacattttcatggatgatacaattcattcaggcaaaccgacaattctcccatgactcctctgatagggttcaaattgttactccaggtagtgaaa |
31479180 |
T |
|
| Q |
124 |
taccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatg |
223 |
Q |
| |
|
| ||||||||| |||||||||| || |||| ||| ||||| |||||| ||||| |||||||| |||||||||||||||||| |||| | |||||| |
|
|
| T |
31479181 |
tgccaagttggttcaacaatcagagcaagggtaatttaatacgaatagattcttctccgattatgcacgacaataacaataatatcgttggctgtgtatg |
31479280 |
T |
|
| Q |
224 |
ttgtgcagtattt |
236 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
31479281 |
ttgtgtagtattt |
31479293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 102 - 247
Target Start/End: Original strand, 31499206 - 31499351
Alignment:
| Q |
102 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
201 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| | || ||||| || |||||||||||||| ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
31499206 |
attgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataaca |
31499305 |
T |
|
| Q |
202 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
247 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
31499306 |
ataatatcattggctttgtatgttgtgcagtattttctatggcacc |
31499351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 31504269 - 31504490
Alignment:
| Q |
27 |
atgacattttcatggatgatacaattcattcaggcaaacctacaatcct-acccaacctactttgataggactcaaattgtaactccaggaagtgaaata |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||||||| | || | ||||||| || || || ||| || ||||| |||| ||||||| |
|
|
| T |
31504269 |
atgacattttcatggatgatacaattcattaaggcaaacccacaatcctcatccga-ctactttcatgtgattc-aatcgttactcctggaaatgaaata |
31504366 |
T |
|
| Q |
126 |
ccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgtt |
225 |
Q |
| |
|
||||||||| |||||||| | || |||| || ||||||||||| || | ||||||||||| ||| |||||||||||||| | |||||||| |
|
|
| T |
31504367 |
ccaagttggttcaacaattagagcaagggtcgctccatacaaataga-----ctggtcttatgcatgactttaaaaataatatcattggttgtgtatgtt |
31504461 |
T |
|
| Q |
226 |
gtgcagtatttaccatggcaccacgtcgt |
254 |
Q |
| |
|
||| ||||||| |||||| ||| |||||| |
|
|
| T |
31504462 |
gtgtagtattttccatggaacctcgtcgt |
31504490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 31148223 - 31148111
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaa |
123 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||| ||| |||| |||||||| || | |||| || ||||||||| ||||| |||||||||| |
|
|
| T |
31148223 |
agcatgatattttcatggatgatacaactcattcgggcgaacccacaatcct---catc------tgatgtgattcaaattgttactccgggaagtgaaa |
31148133 |
T |
|
| Q |
124 |
taccaagttggatcaacaatca |
145 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
31148132 |
taccaagttggttcaacaatca |
31148111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 31157082 - 31156947
Alignment:
| Q |
100 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataa |
199 |
Q |
| |
|
||||||| | ||| |||||||||||||||| |||| |||||||||| || | ||||||||||||| ||| ||| ||||| |||||| | ||||| | |
|
|
| T |
31157082 |
aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga |
31156983 |
T |
|
| Q |
200 |
caataatatcattggatttgtatgttgtgcagtatt |
235 |
Q |
| |
|
|||| || ||||||| ||| |||||||||||||| |
|
|
| T |
31156982 |
caatgatttcattggcattgcttgttgtgcagtatt |
31156947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 31157161 - 31157122
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaa |
63 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
31157161 |
agcatggcattttcatggatgatacaattgattcaggcaa |
31157122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 31484918 - 31484966
Alignment:
| Q |
100 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaag |
148 |
Q |
| |
|
||||||| | |||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
31484918 |
aaattgttattccaggcagtgaaataccaagctggttcaacaatcaaag |
31484966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 292
Target Start/End: Original strand, 17441008 - 17441203
Alignment:
| Q |
91 |
ataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgca |
190 |
Q |
| |
|
|||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
17441008 |
ataggattcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaatagaccaatctcctattaagca |
17441107 |
T |
|
| Q |
191 |
tgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcgaccattatggaactagtt |
290 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||| |||||||||| | |||| || || ||||||||||| || ||||||||| ||| |
|
|
| T |
17441108 |
tg------acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccatcgtcggcccatatggaactggtt |
17441201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 17440953 - 17440995
Alignment:
| Q |
24 |
agcatgacattttcatggatgatacaattcattcaggcaaacc |
66 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
17440953 |
agcatgacattttcatggatgatgcaattcattaaggcaaacc |
17440995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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