View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_16 (Length: 382)
Name: NF10579_low_16
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_16 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 176064 - 175719
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaaatttcattttgaaatattccacgagatatata |
118 |
Q |
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| T |
176064 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttgtaaacatcattttgaa---ttccacgagatatata |
175968 |
T |
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| Q |
119 |
gctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaat |
218 |
Q |
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| T |
175967 |
gctagaaacagcaactaccttgtaagtatgggtaaattgagcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaat |
175868 |
T |
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| Q |
219 |
atattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatgg-ttgaagacagatgatgccatcgcaagagtcag |
317 |
Q |
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| T |
175867 |
atattgaatttggtggtacaagggttccatagtagcggatcaccacagtcgaatctgtcatcgatggtttgaagacagatgatgccatcgcaagagtcag |
175768 |
T |
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| Q |
318 |
ctatgatagcacgaatgttagaaggatttagaggaaagttgagcttcat |
366 |
Q |
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| T |
175767 |
ctatgatagcacgaatgttagaaggatttagaggaaagttgagcttcat |
175719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 7565042 - 7565106
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
83 |
Q |
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| T |
7565042 |
aagggaagtctggaatccttctccaaacattgctacctaaagtatgaaccttaacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 1471214 - 1471278
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
83 |
Q |
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| T |
1471214 |
aagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 40660 - 40724
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
83 |
Q |
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| T |
40660 |
aagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 55419542 - 55419478
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
83 |
Q |
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| T |
55419542 |
aagggaagtctggtatccttttccaaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 1421454 - 1421520
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
86 |
Q |
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| T |
1421454 |
aagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 24233689 - 24233753
Alignment:
| Q |
19 |
aagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
83 |
Q |
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| T |
24233689 |
aagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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