View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_18 (Length: 380)
Name: NF10579_low_18
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 38611975 - 38611715
Alignment:
| Q |
1 |
gaccttctccttccgattacaaaaatacatgttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgag |
100 |
Q |
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| T |
38611975 |
gaccttctccttccgattacaaaaatacatggtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaacattgag |
38611876 |
T |
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| Q |
101 |
atatccacagccannnnnnnnnnnnnnnnnnnacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatc |
200 |
Q |
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| T |
38611875 |
atatccacagccagtttgttgttgttgttgttacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtctacatc |
38611776 |
T |
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| Q |
201 |
aaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacattt |
261 |
Q |
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| T |
38611775 |
aaggagttctaaatcagattcaaacagttcatcatcaattagggatattagcaaaacattt |
38611715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 38611569 - 38611525
Alignment:
| Q |
320 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttc |
364 |
Q |
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| T |
38611569 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttc |
38611525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
| Q |
193 |
tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac |
257 |
Q |
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| T |
34722229 |
tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac |
34722165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
| Q |
197 |
catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat |
259 |
Q |
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| T |
34731519 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat |
34731457 |
T |
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