View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_2 (Length: 459)
Name: NF10579_low_2
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 11 - 334
Target Start/End: Original strand, 48649946 - 48650269
Alignment:
| Q |
11 |
caaagggtatggatttgtaacattcaaagatgcagaggctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatggtcgacgagccaactgcaat |
110 |
Q |
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| T |
48649946 |
caaagggtatggatttgtaacattcaaagatgcagattctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatggtcgacgagccaactgcaat |
48650045 |
T |
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| Q |
111 |
atcgcttctcttggtgctcgtcgtccaaggtcttctcccatcannnnnnnnnnnnnnnnnnnnnnnnttccatacacacaaggaggaacaaagaatatcc |
210 |
Q |
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| T |
48650046 |
atcgcttctcttggtgctcgtcgtccaaggtcttctcccatcactcctcctccttctcctcctcctcttccatacacacaaggaggaacaaagaatatcc |
48650145 |
T |
|
| Q |
211 |
accgtagaaaccagcagcaggttcaatggtattatccggtggtaacacctacccctccttcctcaatattccatcatcatcacgccattcctttctacgg |
310 |
Q |
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| T |
48650146 |
accgtagaaatcagcagcaggttcaatggtattatccggtggtaacacctacacctccttcctcaatattccatcatcatcatgcccttcctttctacgg |
48650245 |
T |
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| Q |
311 |
gtatatatattatattttattctt |
334 |
Q |
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|||||||||||||||||||||||| |
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| T |
48650246 |
gtatatatattatattttattctt |
48650269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 315 - 445
Target Start/End: Original strand, 48650345 - 48650475
Alignment:
| Q |
315 |
atatattatattttattcttgctttttgttctaaaaaataggcgttgagttgaggcatataatgtgatttaatgaatctctttctctcattcattcaggt |
414 |
Q |
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| T |
48650345 |
atatattatattttattcttgctttttgttctaaaaaataggcgttgagttttggcatataatgtgatttagtgaatctctttctctcattcattcaggt |
48650444 |
T |
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| Q |
415 |
acacgcccacctacattgcaacagatcatat |
445 |
Q |
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| T |
48650445 |
acacgcccacctacattgcaacagatcatat |
48650475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 41290796 - 41290736
Alignment:
| Q |
31 |
cattcaaagatgcagaggctgcaaagaaggcttgcgaggaaccaactgtgatcatcaatgg |
91 |
Q |
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||||||| || |||||||| ||||| ||||||||||||||||||| ||||| ||||||||| |
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| T |
41290796 |
cattcaaggaagcagaggcagcaaataaggcttgcgaggaaccaagtgtgaacatcaatgg |
41290736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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