View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_20 (Length: 368)
Name: NF10579_low_20
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 44703971 - 44704320
Alignment:
| Q |
1 |
aaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44703971 |
aaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcatt |
44704070 |
T |
|
| Q |
101 |
gcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctc |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704071 |
ccgttaaaaaccgtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctc |
44704170 |
T |
|
| Q |
201 |
gtccgatcattgatgatctcttcacgctgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgatgtagactcggcctctg |
300 |
Q |
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|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704171 |
gtccgatcatagatgacctcttcacactgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgatgtagactcggcctctg |
44704270 |
T |
|
| Q |
301 |
cttcacatgatttttaagtttattcaaatcaatgaagcaattcaatggtg |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44704271 |
cttcacatgatttttaagtttattcaaatcaatgaagcaattcaatggtg |
44704320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 44714674 - 44714973
Alignment:
| Q |
1 |
aaaaccaggcttaacacaaagagataacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcatt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||| || |||||| || |||||| |||||||||||||| |||| ||||||||| || |||||||||| |
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| T |
44714674 |
aaaaccaggcttaacacaaagagagaacacttccttcccaagcgtattacctgtagtggggtccactttacgataaatctcagccacaatttccttcatc |
44714773 |
T |
|
| Q |
101 |
gcgttaaaaacggtgcaacaacgttgagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctc |
200 |
Q |
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||||||||||| |||||| |||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||||||| ||||| | ||||| || |
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| T |
44714774 |
gcgttaaaaactttgcaaccacgttgagagaaacacccttcgatatggtactcctcacctgggttatcgtacacctccactgtcactcccgcacgtggtc |
44714873 |
T |
|
| Q |
201 |
gtccgatcattgatgatctcttcacgctgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgatgtagactcggcctctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
44714874 |
gtccgatcattgatgatctcttcacgctgaaggttggtttatcaccttccattttttcacctttaaagccttcccaccgttgatgcagactcggcctctg |
44714973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 291
Target Start/End: Complemental strand, 2278213 - 2277948
Alignment:
| Q |
26 |
aacacttcttttccaagcataacacctgtggtggggtccactttgcgatgaatctcagctacgttttccttcattgcgttaaaaacggtgcaacaacgtt |
125 |
Q |
| |
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||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||| || || ||| | || ||||||| | || || | || |
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| T |
2278213 |
aacacttctttcccaagcataacactagtggtggggtccactttacgacgaatctcagccactaatttctttgtggcattaaaaatcttacagcatcttt |
2278114 |
T |
|
| Q |
126 |
gagagaagcaaccttcaatgtggtactcctcaccagggttatcgtacacctccactgttactccagtacgtgctcgtccgatcattgatgatctcttcac |
225 |
Q |
| |
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| | ||| || ||||||||| |||||||| |||| |||||||||| ||||||||||||| | | || ||| |||| ||||||||||| ||||| |
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| T |
2278113 |
gtgggaaacacccttcaatgaggtactccacacctgggttatcgtgtacctccactgttatggtcattcttgaccgtgcgattattgatgatcttttcac |
2278014 |
T |
|
| Q |
226 |
gctgaaggtaggtttatcaccgtctcttctttcacctttaaagccttcccaccgttgatgtagact |
291 |
Q |
| |
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||||| | ||||||||||||||| |||| || ||||| || |||||||| | |||||| ||||| |
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|
| T |
2278013 |
attgaagattggtttatcaccgtcttttctctctcctttgaatccttcccatctttgatgaagact |
2277948 |
T |
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