View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_21 (Length: 366)
Name: NF10579_low_21
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 40833897 - 40834019
Alignment:
| Q |
64 |
attttttaatgtataacagtgacaatgaagtttaagcctaagaaagaccttaggccggctagatcaattctaacag-ttttaacatattcttagcttagc |
162 |
Q |
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| T |
40833897 |
attttttaatgtataacagagacaatgaagtttaagcctaagaaagaccttaggccggctagatcaattctaacagcttttaacatattcttaccttagc |
40833996 |
T |
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| Q |
163 |
gagtaaaccaataaaacataaag |
185 |
Q |
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| T |
40833997 |
gagtaaaccaataaaacataaag |
40834019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 40833763 - 40833826
Alignment:
| Q |
1 |
aaagacccggttcatacatacttgctctgttccttcattcctccataaatgtccatttttaaga |
64 |
Q |
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| T |
40833763 |
aaagacccggttcatacatacttgctctgttccttcattcctccataaatgtccatttttaaga |
40833826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 40834112 - 40834150
Alignment:
| Q |
262 |
taaaagagaatatgcatgattatttcaaattcaaactct |
300 |
Q |
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| T |
40834112 |
taaaagagaatatgcatgattatttcaaattcaaactct |
40834150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 40834045 - 40834114
Alignment:
| Q |
181 |
taaagctgttatacaaaaacaa---agtaatttgcaaggaagtatgt---tggcctgtcatgacatttaa |
244 |
Q |
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| T |
40834045 |
taaagctgttatacaaaaacaaagtagtaatttgcaaggaagtatgtatgttgcctgtcatgacatttaa |
40834114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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