View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_22 (Length: 366)
Name: NF10579_low_22
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 46900575 - 46900916
Alignment:
| Q |
16 |
attttcttattcagttttgatatgtgatctagtgaac-aagaaagatgtttctttgtatattttatgttatatgtcatgcttatttttggtttctatctt |
114 |
Q |
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| T |
46900575 |
attttcttattcagttttgatatgtgatctagtgaactaagaaagatgtttctttgtatattaaatgttatatgtcatgcttatttttggtttctatctt |
46900674 |
T |
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| Q |
115 |
ctatacaagcttgtccttctataaatctgtcatgttctatcttctcgtacctgatactcgtacttggtactttataaccttgtccatgcaacataggtgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46900675 |
ctatacaagcttgtccttctataaatctgtcatgttctatcttctcgtacctgatactcgtacttggtaccctataaccttgtccatgcaacataggtgt |
46900774 |
T |
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| Q |
215 |
ccagtaattcccacaccgaagtgactgattttttctttcaatcatatcatacaattgaaatttgagtaattgcttttgcttgcgattcggaacaatcaac |
314 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46900775 |
ccagtaattcccacaccgaagtgactgattttatctttcaatcatatcatacaattgaaatttgagtaattgcttttgcttgcgattcggaacaatcaac |
46900874 |
T |
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| Q |
315 |
tattatattttgttcatctttccaatcctgtttcgtcctttg |
356 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46900875 |
tattatattttgttcatctttccaatcctgtttcgtcttttg |
46900916 |
T |
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