View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_23 (Length: 366)
Name: NF10579_low_23
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 6892869 - 6892546
Alignment:
| Q |
30 |
ttgtctaataagtcacatgcggcagaacattttaaagtaaaattacaattgcaacgatgttacacacaatactacatattgcgaaaagttgaagtcaaac |
129 |
Q |
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| T |
6892869 |
ttgtctaataagtcacatgcggcataacattttaaagtaaagttacaatcgcaacgatgttacacacaatactacatattgcgaaaagttgaagtcaaat |
6892770 |
T |
|
| Q |
130 |
gtaactaatgatgttgtaattatagttacaaagacaaaag--nnnnnnnnnttgtattactatgtcttttagttaattatctttttcacttttggaatct |
227 |
Q |
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| T |
6892769 |
gtaactaatgatgttgtaattatagttacaaagacaaaagaaaaaaaaaaattgtattactatctcttttagttaattatctttttcacttttggaatct |
6892670 |
T |
|
| Q |
228 |
ccaaaatacaactacattcttcaaatgtctttctatactttgaatcctccctctagtttaagatttcctgtattcacgtaatcaagacgtcagtgtccgt |
327 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||| || |||||||||||| |||| |||||| || |
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| T |
6892669 |
ccaaaatacaactgcattcttcaaatgtttttctatactttaaatccttcctctagtttaagatttcttgcattcacgtaatcgagacaatagtgtcagt |
6892570 |
T |
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| Q |
328 |
tctttcaatattttaaactataaa |
351 |
Q |
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|| ||||||||||||||||||||| |
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| T |
6892569 |
tcattcaatattttaaactataaa |
6892546 |
T |
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