View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_24 (Length: 361)
Name: NF10579_low_24
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 2 - 339
Target Start/End: Original strand, 26692879 - 26693217
Alignment:
| Q |
2 |
taaagggacaacaaaaatgatcaaccaacagaaaagtgaggacaaaaactgaacgcaaaggtaagaactaagaacatggggtaaattaaagttgttgcta |
101 |
Q |
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| T |
26692879 |
taaagggacaacaaaaatgatcaaccaacagaaaagtgaggacaaaaactgaacgcaaaggtaagaactaagaacatggggtaaattaaagttgttgcta |
26692978 |
T |
|
| Q |
102 |
acccatggttcttggaaaagagatagcaccaaaacagagatgggcgctctcatggggtaatggtagcttcacgtgcaaagtgtaagggacaaagttccgg |
201 |
Q |
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| T |
26692979 |
acccatggttcttggaaaagagatagcaccaaaacagagatgggcgctctcatggggtaatggtagcttcacgtgcaaagtgtaagggacaaagttccgg |
26693078 |
T |
|
| Q |
202 |
agcaattaagcaagtgattagacagttaattgaag-aaagtaattaaatgccaccaattaattatggacacgaaactgaaattaaagctcaaagttgaag |
300 |
Q |
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| T |
26693079 |
agcaattaagcaagtgattagacaattaattgaagaaaagtaattaaatgccaccaattaattatggacacgaaactgaaattaaagctcaaagttgaag |
26693178 |
T |
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| Q |
301 |
tttggttagcttatcaacaattatgtgattagacatgtg |
339 |
Q |
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| T |
26693179 |
tttggttagcttatcaacaatcatgtgattagacatgtg |
26693217 |
T |
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