View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_26 (Length: 351)

Name: NF10579_low_26
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_26
NF10579_low_26
[»] chr3 (7 HSPs)
chr3 (1-335)||(48605183-48605517)
chr3 (100-160)||(16792271-16792331)
chr3 (96-191)||(33947605-33947700)
chr3 (29-112)||(2990926-2991009)
chr3 (17-59)||(42835500-42835542)
chr3 (74-131)||(21754253-21754310)
chr3 (45-82)||(54838655-54838692)
[»] chr1 (6 HSPs)
chr1 (36-131)||(46937585-46937680)
chr1 (46-155)||(49825848-49825959)
chr1 (82-161)||(7347678-7347757)
chr1 (97-165)||(52695339-52695407)
chr1 (100-147)||(17209206-17209253)
chr1 (96-144)||(50322043-50322091)
[»] chr2 (4 HSPs)
chr2 (82-192)||(11529983-11530093)
chr2 (17-144)||(17504940-17505067)
chr2 (16-144)||(1813482-1813608)
chr2 (100-161)||(8818241-8818302)
[»] chr4 (2 HSPs)
chr4 (47-119)||(35522094-35522166)
chr4 (98-133)||(2843594-2843629)
[»] scaffold0129 (1 HSPs)
scaffold0129 (96-151)||(31413-31468)
[»] chr7 (2 HSPs)
chr7 (90-165)||(30900117-30900192)
chr7 (86-161)||(38921247-38921322)
[»] chr5 (9 HSPs)
chr5 (17-88)||(9634871-9634942)
chr5 (37-88)||(41846726-41846777)
chr5 (96-130)||(11257580-11257614)
chr5 (74-152)||(27725501-27725579)
chr5 (109-162)||(3734955-3735008)
chr5 (104-161)||(23645951-23646008)
chr5 (104-161)||(23812566-23812623)
chr5 (74-131)||(33342743-33342800)
chr5 (18-110)||(41970272-41970364)
[»] chr6 (2 HSPs)
chr6 (74-128)||(18270604-18270658)
chr6 (20-68)||(29165913-29165961)
[»] chr8 (4 HSPs)
chr8 (34-138)||(9112426-9112530)
chr8 (17-63)||(18899920-18899966)
chr8 (99-152)||(30560082-30560135)
chr8 (98-130)||(11412609-11412641)


Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 48605183 - 48605517
Alignment:
Q  1 tttagataaaccagttttgtcaattgcaaatcacagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatatt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48605183 tttagataaaccagttttgtcaattgcaaatcgcagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatatt 48605282  T
Q  101 ttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagcactacagtactactatagccactatttaacactaccggg 200  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48605283 tcgtactaaataatgtatcacagaacaatagtggtctgttcaaaatctgctatgcgatagcactacagtactactatagccactatttaacactaccggg 48605382  T
Q  201 ataaagtagaaatactgatatgggaccaaaattacttctctcacacaaccaaaaaagttaagaaaacaattttcaggatttaacagaacttttttccaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48605383 ataaagtagaaatactgatatgggaccaaaattacttctctcacacaaccaaaaaagttaagaaaacaattttcaggatttaacagaacttttttccaat 48605482  T
Q  301 gtgttcatataagtatatgtaaatcacatcctcct 335  Q
    |||||||||||||||||||||||||||||||||||    
T  48605483 gtgttcatataagtatatgtaaatcacatcctcct 48605517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 16792331 - 16792271
Alignment:
Q  100 tttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatag 160  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||| |||| ||||||||||    
T  16792331 tttgtactaaatattgtatcgcggaacaatagtggtttgttcaaattctgttatgcgatag 16792271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 33947700 - 33947605
Alignment:
Q  96 atattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagcactacagtactactatagccactatttaac 191  Q
    ||||||| |||| |||  |||||| | ||||||||||| | |||||||| |||| ||||| ||||||||| || || ||||||||| |||||||||    
T  33947700 atattttttactgaatggtgtatctctgaacaatagtgttttgttcaaattctgttatgcaatagcactatagcaccactatagccgctatttaac 33947605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 2990926 - 2991009
Alignment:
Q  29 aatcacagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaata 112  Q
    |||||||||||| |||||||  ||||||||||||| |||| ||| | ||||| ||| ||| || || | |||||||||||||||    
T  2990926 aatcacagaaaatagaggttcattcaaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaata 2991009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 42835542 - 42835500
Alignment:
Q  17 ttgtcaattgcaaatcacagaaaacagaggtttgttcaaattc 59  Q
    |||||||||||||||| ||||||| | ||||||||||||||||    
T  42835542 ttgtcaattgcaaatcgcagaaaatataggtttgttcaaattc 42835500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 21754310 - 21754253
Alignment:
Q  74 gctatagcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaatag 131  Q
    ||||||||||||||| || || | | ||||||||||||| |||||||| |||||||||    
T  21754310 gctatagcgccgctatttgacaacaatttgtactaaatagtgtatcgcggaacaatag 21754253  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 54838692 - 54838655
Alignment:
Q  45 ggtttgttcaaattccgctgtgcagcagcgctatagcg 82  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  54838692 ggtttgttcaaattccgctgtgcaacagtgctatagcg 54838655  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 46937680 - 46937585
Alignment:
Q  36 gaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaatag 131  Q
    ||||| || ||||||||||||||||||| |||| ||| | ||||||||| ||| ||||| |||||||||||||||||  | ||||| |||||||||    
T  46937680 gaaaatagcggtttgttcaaattccgctatgcaacagtgttatagcgccactatttcacaatattttgtactaaatagcgcatcgcggaacaatag 46937585  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 49825959 - 49825848
Alignment:
Q  46 gtttgttcaaattccgctgtgcagcagcgctata--gcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaatagtggtctgttcaa 143  Q
    |||||||||||||| ||| |||| ||| ||||||  || | |||| ||||| ||||||||||||||||| ||||| |||||||||||||| | |  ||||    
T  49825959 gtttgttcaaattctgctatgcaacagtgctatatagcactgctatttcacaatattttgtactaaatagtgtattgcagaacaatagtgttttagtcaa 49825860  T
Q  144 aatctgctatgc 155  Q
    | ||||||||||    
T  49825859 attctgctatgc 49825848  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 7347757 - 7347678
Alignment:
Q  82 gccgctacttcaccatattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagc 161  Q
    ||||||| ||||| ||||||||||||||||| ||||| ||| ||||||||   | |||||||| |||||||||| |||||    
T  7347757 gccgctatttcacaatattttgtactaaatagtgtattgcaaaacaatagcaatttgttcaaattctgctatgcaatagc 7347678  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 52695407 - 52695339
Alignment:
Q  97 tattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagcacta 165  Q
    |||||||||||||||| |||||| ||||||||||||| |  | ||||| || ||||||| |||||||||    
T  52695407 tattttgtactaaatagtgtatcacagaacaatagtgattggctcaaattccgctatgcaatagcacta 52695339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 147
Target Start/End: Complemental strand, 17209253 - 17209206
Alignment:
Q  100 tttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatc 147  Q
    ||||||||||||||||||| | |||||||||||| | |||||||||||    
T  17209253 tttgtactaaataatgtatagtagaacaatagtgatttgttcaaaatc 17209206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 50322091 - 50322043
Alignment:
Q  96 atattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaa 144  Q
    ||||||| ||||||||  ||||||| |||||||||||||| ||||||||    
T  50322091 atattttatactaaattgtgtatcgtagaacaatagtggtttgttcaaa 50322043  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 11530093 - 11529983
Alignment:
Q  82 gccgctacttcaccatattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagcactacagtactactatagcc 181  Q
    ||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| | |||||||| |  ||||||| | | ||||| ||  | |||||||||    
T  11530093 gccgctatttcacaatattatgtactaaatagtgtatcgcagaacaatagtgatttgttcaaatttcgctatgcaacaacactatagcccgactatagcc 11529994  T
Q  182 actatttaaca 192  Q
     ||||||||||    
T  11529993 gctatttaaca 11529983  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 17505067 - 17504940
Alignment:
Q  17 ttgtcaattgcaaatcacagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaataatgt 116  Q
    |||||||||||| ||| ||||||| ||  ||||||||||||||||||   || ||| | ||||| || |||| ||||| |||||||| |||||||    |    
T  17505067 ttgtcaattgcatatcgcagaaaatagttgtttgttcaaattccgctacacaacagtgttatagtgctgctatttcacaatattttgcactaaattgcat 17504968  T
Q  117 atcgcagaacaatagtggtctgttcaaa 144  Q
    ||| |||||||||| || ||||||||||    
T  17504967 atcacagaacaataatgatctgttcaaa 17504940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 1813608 - 1813482
Alignment:
Q  16 tttgtcaattgcaaatcacagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaataatg 115  Q
    |||||| |||||| ||||| ||||| |  |||||||||||||||||||   || ||| ||||||   |||||||||||| || || |||||||| || ||    
T  1813608 tttgtcgattgcagatcacggaaaataatggtttgttcaaattccgctacacaacagtgctata--accgctacttcacaatgttctgtactaagtagtg 1813511  T
Q  116 tatcgcagaacaatagtggtctgttcaaa 144  Q
    ||||   ||||||||| ||| ||||||||    
T  1813510 tatcatggaacaatagcggtttgttcaaa 1813482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 8818241 - 8818302
Alignment:
Q  100 tttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagc 161  Q
    ||||||||||||| ||||||| ||||| |||| ||| |||||||| || ||||||| |||||    
T  8818241 tttgtactaaatagtgtatcgtagaactatagaggtttgttcaaattccgctatgctatagc 8818302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 35522166 - 35522094
Alignment:
Q  47 tttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaataatgtatc 119  Q
    ||||||||||||||||| ||||  | || ||||||||||||| ||||| |||||||| |||||||| ||||||    
T  35522166 tttgttcaaattccgctatgcaagaacgttatagcgccgctatttcacaatattttgcactaaatagtgtatc 35522094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 2843594 - 2843629
Alignment:
Q  98 attttgtactaaataatgtatcgcagaacaatagtg 133  Q
    ||||||||||||||| ||||||||||||||||||||    
T  2843594 attttgtactaaatagtgtatcgcagaacaatagtg 2843629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 31468 - 31413
Alignment:
Q  96 atattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgct 151  Q
    ||||||||||||||||  ||||||||||||||||||| || |||||||| ||||||    
T  31468 atattttgtactaaatcttgtatcgcagaacaatagtagtttgttcaaattctgct 31413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 30900117 - 30900192
Alignment:
Q  90 ttcaccatattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagcacta 165  Q
    ||||| ||||||||||||||||| |||||||| ||||||||| | |  ||||||| || ||||||| |||||||||    
T  30900117 ttcacaatattttgtactaaatagtgtatcgctgaacaatagcgattcgttcaaattccgctatgcaatagcacta 30900192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 161
Target Start/End: Complemental strand, 38921322 - 38921247
Alignment:
Q  86 ctacttcaccatattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagc 161  Q
    ||||||||| |||||||| |||||||| | ||||||||||||| |||| | |||||||| |||| ||||| |||||    
T  38921322 ctacttcacaatattttgcactaaatagtatatcgcagaacaacagtgatttgttcaaattctgttatgcaatagc 38921247  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 9634871 - 9634942
Alignment:
Q  17 ttgtcaattgcaaatcacagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgcta 88  Q
    |||||||||||| || |||||||| || |||||||||||||||||||  ||| ||  |||||||||||||||    
T  9634871 ttgtcaattgcagattacagaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgcta 9634942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 41846726 - 41846777
Alignment:
Q  37 aaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgcta 88  Q
    ||||||| |||||| |||||||| ||| |||||||| |||||||||||||||    
T  41846726 aaaacagcggtttgctcaaattctgctatgcagcagtgctatagcgccgcta 41846777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 11257614 - 11257580
Alignment:
Q  96 atattttgtactaaataatgtatcgcagaacaata 130  Q
    |||||||||||||||||| ||||||||||||||||    
T  11257614 atattttgtactaaataaagtatcgcagaacaata 11257580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 27725579 - 27725501
Alignment:
Q  74 gctatagcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgcta 152  Q
    ||||||| ||||||| || || ||||||||||||||||| || || || ||||||| ||| | |||||||| |||||||    
T  27725579 gctatagtgccgctatttgacaatattttgtactaaatagtggattgcggaacaattgtgatttgttcaaattctgcta 27725501  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 3734955 - 3735008
Alignment:
Q  109 aataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagca 162  Q
    |||| |||||||||||||||||||||||||| ||| ||| |||| || ||||||    
T  3734955 aatagtgtatcgcagaacaatagtggtctgtccaatatccgctacgctatagca 3735008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 23646008 - 23645951
Alignment:
Q  104 tactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagc 161  Q
    |||||||||| |||||||||||||||||||   |||||||| |||| ||||| |||||    
T  23646008 tactaaataaggtatcgcagaacaatagtgacttgttcaaattctgttatgctatagc 23645951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 161
Target Start/End: Original strand, 23812566 - 23812623
Alignment:
Q  104 tactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgctatgcgatagc 161  Q
    |||||||||| |||||||||||||||||||   |||||||| |||| ||||| |||||    
T  23812566 tactaaataaggtatcgcagaacaatagtgacttgttcaaattctgttatgctatagc 23812623  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 33342800 - 33342743
Alignment:
Q  74 gctatagcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaatag 131  Q
    ||||||||||||||| || || ||| |||||||| |||| ||||||||| ||||||||    
T  33342800 gctatagcgccgctatttgacaatactttgtacttaatagtgtatcgcataacaatag 33342743  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 41970364 - 41970272
Alignment:
Q  18 tgtcaattgcaaatcacagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaa 110  Q
    |||||||| || ||| ||||||| || |  |||||||||||| |||  ||| ||  ||||||||||| ||| ||||| |||||||||||||||    
T  41970364 tgtcaatttcagatcgcagaaaatagcgccttgttcaaattctgctaagcaacaatgctatagcgccactatttcacaatattttgtactaaa 41970272  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 18270604 - 18270658
Alignment:
Q  74 gctatagcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaa 128  Q
    ||||||| ||||||| ||||| |||||||||| |||||| |||||||||||||||    
T  18270604 gctatagtgccgctatttcacaatattttgtattaaatagtgtatcgcagaacaa 18270658  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 29165961 - 29165913
Alignment:
Q  20 tcaattgcaaatcacagaaaacagaggtttgttcaaattccgctgtgca 68  Q
    ||||||||| ||||| |||||||| ||||||||||||||| ||| ||||    
T  29165961 tcaattgcagatcacggaaaacagcggtttgttcaaattctgctatgca 29165913  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 9112530 - 9112426
Alignment:
Q  34 cagaaaacagaggtttgttcaaattccgctgtgcagcagcgctatagcgccgctacttcaccatattttgtactaaataatgtatcgcagaacaatagtg 133  Q
    ||||||| | ||||||||| ||||||| || ||||  |  ||| ||||||| ||| ||||| ||||| |||||||||||   ||||||||||||||||||    
T  9112530 cagaaaaaaaaggtttgtttaaattccactatgcaatattgctgtagcgccactatttcacaatattctgtactaaatagcatatcgcagaacaatagtg 9112431  T
Q  134 gtctg 138  Q
     ||||    
T  9112430 atctg 9112426  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 18899920 - 18899966
Alignment:
Q  17 ttgtcaattgcaaatcacagaaaacagaggtttgttcaaattccgct 63  Q
    |||||||||||||||| ||||||| ||  ||||||||||||||||||    
T  18899920 ttgtcaattgcaaatcgcagaaaatagtagtttgttcaaattccgct 18899966  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 30560135 - 30560082
Alignment:
Q  99 ttttgtactaaataatgtatcgcagaacaatagtggtctgttcaaaatctgcta 152  Q
    |||| ||||||||| ||||||||| |||||||||||| ||| |||| |||||||    
T  30560135 ttttttactaaatagtgtatcgcaaaacaatagtggtttgtccaaattctgcta 30560082  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 11412609 - 11412641
Alignment:
Q  98 attttgtactaaataatgtatcgcagaacaata 130  Q
    ||||||||||||||| |||||||||||||||||    
T  11412609 attttgtactaaatagtgtatcgcagaacaata 11412641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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