View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_27 (Length: 351)
Name: NF10579_low_27
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 43317047 - 43316728
Alignment:
| Q |
15 |
aatcaatcaaccttcacagtagccagtagccaccgtttgagaattaaataattaatctcaactaattattttttaaaacaatagggaggatcataaccaa |
114 |
Q |
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| T |
43317047 |
aatcaatcaaccttcacagtagccagtagccaccatttgagaattaattaattaatctcaactaattattttttaaaacaatagggaggattataaccaa |
43316948 |
T |
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| Q |
115 |
agcaataattaggatcaggagtagtaaaatggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcct |
214 |
Q |
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| T |
43316947 |
agcaataattagga------gtagtaaaatggcaaaacatgtccattcacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcct |
43316854 |
T |
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| Q |
215 |
ctaacatacgaatttgctcgcatcatttggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43316853 |
ctaacatacgaatttgctcgcatcatttggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgca |
43316754 |
T |
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| Q |
315 |
gctcttttagatttctctctatctct |
340 |
Q |
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| T |
43316753 |
gctcttttagatttctctctatctct |
43316728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 24710060 - 24710257
Alignment:
| Q |
143 |
atggcaaaacatgtccatttacgggtattcttttgatttttcctagcaacatgtaattgttgtactcctcctctaacatacgaatttgctcgcatcattt |
242 |
Q |
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| T |
24710060 |
atggcaatacaagtccattttctggtattcatttggtgcttcctagcaacatgcaattgttggaccccacctctaacatacgaattagcacgtgccacgt |
24710159 |
T |
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| Q |
243 |
ggctctcaatgtcattcaactcttcaccttgggattggaccaaaactgccatgtccagaaacacttgatgcagctcttttagatttctctctatctct |
340 |
Q |
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| T |
24710160 |
ggctttcaatattatccaattgttcaccttgtgattgaaccaaaacagacatgtccataaacacttggtgaagctccattagatttctttctatctct |
24710257 |
T |
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