View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_28 (Length: 350)

Name: NF10579_low_28
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_28
NF10579_low_28
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-333)||(13550-13882)
[»] scaffold1049 (1 HSPs)
scaffold1049 (106-158)||(413-465)
[»] chr7 (3 HSPs)
chr7 (106-210)||(19742956-19743060)
chr7 (106-158)||(26083297-26083349)
chr7 (106-158)||(26107084-26107136)
[»] chr6 (2 HSPs)
chr6 (106-158)||(4502303-4502355)
chr6 (106-158)||(15825855-15825907)
[»] chr5 (2 HSPs)
chr5 (106-158)||(548886-548938)
chr5 (106-158)||(30279298-30279350)


Alignment Details
Target: scaffold0024 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 13882 - 13550
Alignment:
Q  1 gagaggtgcagatctttaaagaggtacattagccattgcagttcacatgtaaggcttgctaatgcacgatattcagcttctgagcttgatttggagacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13882 gagaggtgcagatctttaaagaggtacattagccattgcagttcacatgtaaggcttgctaatgcgcgatattcagcttctgagcttgatttggagacga 13783  T
Q  101 ttgactgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacccgttacagatttcctggttgtaggacaagttgcccaatcaga 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13782 tcgactgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacccgttacagatttcctggttgtaggacaagttgcccaatcaga 13683  T
Q  201 atctgcaaaaccagaaagtttcaaattagaagttgctgagtagaataatcctttggtaggggcagttttcagatattgtaaaactctaatagcagcctga 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13682 atctgcaaaactagaaagtttcaaattagaagttgctgagtagaataatcctttggcaggggcagttttcagatattgtaaaactctaatagcagcctga 13583  T
Q  301 tagtgaacttgctgaggtttcgaaacaaattgg 333  Q
    |||||||||||||||||||||||||||||||||    
T  13582 tagtgaacttgctgaggtttcgaaacaaattgg 13550  T

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Target: scaffold1049 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1049
Description:

Target: scaffold1049; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 413 - 465
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  413 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 465  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 19743060 - 19742956
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacccgttacagatttcctggttgtaggacaagttgcccaatcagaatctg 205  Q
    ||||||||||| ||||| ||||| | |||||| ||||| ||||||||| | || || | ||| || || |||  ||||||  |||||||||||||||| |    
T  19743060 tgcttcttggacttccaagaaattaaagaagaaccaagtaacacacaaaatcctgtaatagactttctagtttcaggacaccttgcccaatcagaatcag 19742961  T
Q  206 caaaa 210  Q
    |||||    
T  19742960 caaaa 19742956  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 26083297 - 26083349
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  26083297 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 26083349  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 26107084 - 26107136
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  26107084 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 26107136  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 4502355 - 4502303
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  4502355 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 4502303  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 15825907 - 15825855
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  15825907 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 15825855  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 548886 - 548938
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  548886 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 548938  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 30279298 - 30279350
Alignment:
Q  106 tgcttcttggatttccatgaaatgagagaagatccaagaaacacacaataacc 158  Q
    |||||||| || |||||||| ||||| ||||| ||||||||||||||| ||||    
T  30279298 tgcttcttagacttccatgagatgagggaagagccaagaaacacacaaaaacc 30279350  T

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