View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_29 (Length: 341)
Name: NF10579_low_29
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 12325158 - 12324876
Alignment:
| Q |
7 |
ataggtatataataataaatcatgtctttgttactccctttacatttatgcatcaaataaaaaccttcacataataataaaaacgttgatttttccactt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325158 |
ataggtatataataataaatcatgtctttgttactccctttacatttatgcatcaaataaaaaccttcacataataataaaaacgttgatttttccactt |
12325059 |
T |
|
| Q |
107 |
tacacgttactcactttaaaggattattgcatcgtacattcgtgcatgctttttgaatgaatgtcatcaactcatctcatacctatgatatatcaatccc |
206 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12325058 |
tacacgttactcactttaaaggatcattgcatcgtacattcgtgcatgctttttgaatgaatgtcatcaactcatctcatacctatgatatatcaatccc |
12324959 |
T |
|
| Q |
207 |
attttataattacagagcaatattggtgggttcactggttggggtcctcaaaatacgcatcgttggtttgaggtaagaagtaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12324958 |
attttataattacagagcaatattggtgggttcactggttggggtcctcaaaatacgcatcgttggtttgaggtaagaagtaa |
12324876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University