View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_31 (Length: 335)
Name: NF10579_low_31
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 37155850 - 37155568
Alignment:
| Q |
12 |
aagcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattca |
111 |
Q |
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| T |
37155850 |
aagcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattca |
37155751 |
T |
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| Q |
112 |
atccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcaccctcgatggcctttatatgccac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37155750 |
atccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcaccatcgatggcctttatatgccac |
37155651 |
T |
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| Q |
212 |
aacatgagattaatcaggtacacacatttatgagttgtttgttacgtattagaaagaaataaaaagtgattctgatatttaat |
294 |
Q |
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| T |
37155650 |
aacatgagattaatcaggtacatacatttatgagttgtttgttacgtattagaaagaaataaaaagtgattctgatatttaat |
37155568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 37150718 - 37150503
Alignment:
| Q |
18 |
agaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccct |
117 |
Q |
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| T |
37150718 |
agaatggtacgtagctgcatactctcctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatccct |
37150619 |
T |
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| Q |
118 |
gataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcgcagaacaatcaccggcaccctcgatggcctttatatgccacaacatg |
217 |
Q |
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| T |
37150618 |
gatgaccatctaatcgtcgaaactctccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttgaaggccttttcattccacaatatc |
37150519 |
T |
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| Q |
218 |
agattaatcaggtaca |
233 |
Q |
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| T |
37150518 |
aacttaatcaggtaca |
37150503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 37161451 - 37161293
Alignment:
| Q |
12 |
aagcagagaatggtacttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattca |
111 |
Q |
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||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| |
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| T |
37161451 |
aagcagagaatggtacttagctggatattccactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattca |
37161352 |
T |
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| Q |
112 |
atccctgataaccatctagccgtcgaaactctccttctctccgttgatccttatcttcg |
170 |
Q |
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||||||||||| |||||||| || |||||||||||||| |||||||| ||||||||||| |
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| T |
37161351 |
atccctgataatcatctagcagttgaaactctccttctttccgttgacccttatcttcg |
37161293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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