View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_32 (Length: 330)

Name: NF10579_low_32
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_32
NF10579_low_32
[»] chr5 (3 HSPs)
chr5 (28-322)||(26900365-26900659)
chr5 (133-214)||(9851505-9851586)
chr5 (237-281)||(36203011-36203055)
[»] chr2 (1 HSPs)
chr2 (123-214)||(14218938-14219029)
[»] chr3 (5 HSPs)
chr3 (121-214)||(31362293-31362386)
chr3 (53-214)||(40574303-40574457)
chr3 (65-226)||(52653735-52653888)
chr3 (238-284)||(33709706-33709752)
chr3 (67-214)||(33709803-33709942)
[»] chr1 (3 HSPs)
chr1 (122-195)||(49061366-49061439)
chr1 (53-106)||(31286006-31286059)
chr1 (122-195)||(49053786-49053859)
[»] chr8 (2 HSPs)
chr8 (58-106)||(44729151-44729199)
chr8 (133-210)||(12729368-12729445)
[»] scaffold0007 (1 HSPs)
scaffold0007 (122-196)||(217740-217814)
[»] chr7 (3 HSPs)
chr7 (239-284)||(1840544-1840589)
chr7 (245-306)||(24870308-24870368)
chr7 (154-195)||(24870410-24870451)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 28 - 322
Target Start/End: Complemental strand, 26900659 - 26900365
Alignment:
Q  28 caaaagggtgtacatgtgaacctctttcaagatactttggaatccttgacgtgacttgcacatttatatcaagcgtatcatcaattaaatgcaagtagtt 127  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26900659 caaaagggtgtacatgcgaacctctttcaagatacttcggaatccttgacttgacttgcacatttataacaagcgtatcatcaattaaatgcaagtagtt 26900560  T
Q  128 tataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcacgaaaatgtaattg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||     
T  26900559 tataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcacaagaatgtaatta 26900460  T
Q  228 tattctacaattttcttcctccaaagtgtctctatttatatagaatcttatgtccttacagtggagataaacaactattaggtataatttcttct 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||    
T  26900459 tattctacaattttcttcctccaaagtgtctctatttatatagaatctaatgtccttatagtgaagataaacaactattaggtataatttcttct 26900365  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 9851505 - 9851586
Alignment:
Q  133 aataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcac 214  Q
    |||||| ||||||||  ||| || ||| |||| |||||||||||||| |||||||||||||||   || |||||||||||||    
T  9851505 aataaagttttgtcacattctcttgtgcactagagaaaagaaagactgatttagtattatttttggcagaattttgactcac 9851586  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 36203055 - 36203011
Alignment:
Q  237 attttcttcctccaaagtgtctctatttatatagaatcttatgtc 281  Q
    |||||||  |||||||||||||||||||||| |||| ||||||||    
T  36203055 attttctgtctccaaagtgtctctatttatagagaaacttatgtc 36203011  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 14218938 - 14219029
Alignment:
Q  123 tagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcac 214  Q
    ||||||| |||||||| || | ||| ||| ||||||| |||| |||||||||||| | ||||||||||||||| | || |||||||||||||    
T  14218938 tagtttacaaaataaagttctttcaattttcctcgtgcactagagaaaagaaagaatgatttagtattatttttagcataattttgactcac 14219029  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 214
Target Start/End: Original strand, 31362293 - 31362386
Alignment:
Q  121 agtagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcac 214  Q
    ||||||||| |||||||| || ||||| ||| ||||||| |||||| |||| ||| |  |||||||||||||||||  || |||||||||||||    
T  31362293 agtagtttacaaaataaagttctgtcaattttcctcgtgcactaaaaaaaataaaaaaaaatttagtattattttcgacagaattttgactcac 31362386  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 40574303 - 40574457
Alignment:
Q  53 ttcaagatactttggaatccttgacgtgacttgcacatttatatcaagcgtatca-tcaattaaatgcaagtagtttataaaataaaattttgtcagttt 151  Q
    |||| |||||| ||||||| ||||||||||||||||||| | |  |||||||||| ||||| |        ||||||| | |||||| || ||||| |||    
T  40574303 ttcaggatactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatga--------tagtttacagaataaagttctgtcaattt 40574394  T
Q  152 ccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgactcac 214  Q
    | |||||| |||| |||||||||||| | ||||| ||||||||||  || |||||||||||||    
T  40574395 ctctcgtgcactagagaaaagaaagaatgatttaatattattttcggcagaattttgactcac 40574457  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 226
Target Start/End: Complemental strand, 52653888 - 52653735
Alignment:
Q  65 tggaatccttgacgtgacttgcacatttatatcaagcgtatcatcaattaaatgcaagtagtttataaaataaaattttgtcagtttccctcgtgaacta 164  Q
    ||||||||||||||||||||||||||| | |||||| |||||  ||||         |||||||| | |||||| || ||||| ||| ||||||| ||||    
T  52653888 tggaatccttgacgtgacttgcacattcacatcaagtgtatcgacaat--------ggtagtttacagaataaagttctgtcaattttcctcgtgcacta 52653797  T
Q  165 aagaaaagaaagactaatttagtattattttcaccaaaattttgactcacgaaaatgtaatt 226  Q
     ||||||| |||| | ||||||||| ||||||| || |||||  |||||| | |||||||||    
T  52653796 gagaaaagtaagaatgatttagtataattttcagcagaatttaaactcacaacaatgtaatt 52653735  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 33709752 - 33709706
Alignment:
Q  238 ttttcttcctccaaagtgtctctatttatatagaatcttatgtcctt 284  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||    
T  33709752 ttttctgcctccaaagtgtctctatttatagagaaacttatgtcctt 33709706  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 33709942 - 33709803
Alignment:
Q  67 gaatccttgacgtgacttgcacatttatatcaagcgtatcatcaattaaatgcaagtagtttataaaataaaattttgtcagtttccctcgtgaactaaa 166  Q
    ||||||||||||||||||||||||| | | ||||||||||  ||||         |||||||| | |||||| || |||||  ||| || ||| |||| |    
T  33709942 gaatccttgacgtgacttgcacattcacaccaagcgtatcgacaatg--------gtagtttacagaataaagttctgtcaaattctctggtgcactaga 33709851  T
Q  167 gaaaagaaagactaatttagtattattttcaccaaaattttgactcac 214  Q
    ||||||||||| | ||||||||| ||||||  |||||||| |||||||    
T  33709850 gaaaagaaagaatgatttagtataattttcggcaaaatttagactcac 33709803  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 49061439 - 49061366
Alignment:
Q  122 gtagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattatttt 195  Q
    |||||||| | |||||| |||||||| ||||||||||| |||| |||||||||||| | ||||||||| |||||    
T  49061439 gtagtttacagaataaagttttgtcaatttccctcgtgcactagagaaaagaaagaatgatttagtataatttt 49061366  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 31286059 - 31286006
Alignment:
Q  53 ttcaagatactttggaatccttgacgtgacttgcacatttatatcaagcgtatc 106  Q
    |||| |||||||||||||| ||| ||||||||| ||||| ||||||||| ||||    
T  31286059 ttcaggatactttggaatcattgccgtgacttgaacattcatatcaagcttatc 31286006  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 49053859 - 49053786
Alignment:
Q  122 gtagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattatttt 195  Q
    |||||||| |||||||| || || || ||||||||||| |||| |||| ||||||| | ||||||||| |||||    
T  49053859 gtagtttacaaaataaagttctgccaatttccctcgtgcactagagaagagaaagaatgatttagtataatttt 49053786  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 44729199 - 44729151
Alignment:
Q  58 gatactttggaatccttgacgtgacttgcacatttatatcaagcgtatc 106  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  44729199 gatacattggaatccttgacgtgacttgcacattcataccaagcgtatc 44729151  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 210
Target Start/End: Complemental strand, 12729445 - 12729368
Alignment:
Q  133 aataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttcaccaaaattttgac 210  Q
    |||||| || ||||| |||| |||||| |||| |||||||||||| | ||||||||| ||||||  || |||||||||    
T  12729445 aataaagttctgtcaatttctctcgtgcactagagaaaagaaagaattatttagtataattttcggcagaattttgac 12729368  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 217814 - 217740
Alignment:
Q  122 gtagtttataaaataaaattttgtcagtttccctcgtgaactaaagaaaagaaagactaatttagtattattttc 196  Q
    |||||||| |||||||  || || || |||| ||||||||||| |||||||||||| | |||||| |||||||||    
T  217814 gtagtttacaaaataatgttctgccaatttctctcgtgaactagagaaaagaaagaattatttagaattattttc 217740  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 1840589 - 1840544
Alignment:
Q  239 tttcttcctccaaagtgtctctatttatatagaatcttatgtcctt 284  Q
    ||||| |||||||| |||||||||||||| |||| |||||||||||    
T  1840589 tttctgcctccaaaatgtctctatttatagagaaacttatgtcctt 1840544  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Complemental strand, 24870368 - 24870308
Alignment:
Q  245 cctccaaagtgtctctatttatatagaatcttatgtccttacagtggagataaacaactatt 306  Q
    ||||||||||||||||||||||| ||||  |||||| ||||||||| ||| ||| |||||||    
T  24870368 cctccaaagtgtctctatttatagagaaaattatgt-cttacagtgaagagaaataactatt 24870308  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 24870451 - 24870410
Alignment:
Q  154 ctcgtgaactaaagaaaagaaagactaatttagtattatttt 195  Q
    |||||| |||| |||||||||||||| |||||||||||||||    
T  24870451 ctcgtgcactagagaaaagaaagacttatttagtattatttt 24870410  T

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