View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_33 (Length: 329)
Name: NF10579_low_33
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 23697526 - 23697214
Alignment:
| Q |
1 |
acaaaaataaaactcctactcaatattacatatcacaatcatattttcaaatatacatcaatcaagcaattgatgtaacgttgtgctatgcaatttcact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23697526 |
acaaaaataaaactcctactcaatattacatatcaaaatcatattttcaaatatatatcaatcaagcaattgatgtaacgttgtgctatgcaatttcact |
23697427 |
T |
|
| Q |
101 |
cgtcatgccatttctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgcggataaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23697426 |
cgtcatgcaatttctatccagttgcacacttataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgcggataaa |
23697327 |
T |
|
| Q |
201 |
atcaatatgccaaattttttcttacaaatcaaagcagaataactaatatttaagcaagcacccaaaataaaaatgcaaaagtagaattcttaacaaaaga |
300 |
Q |
| |
|
| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23697326 |
aacaatatgacaaatttttttttacaaatcaaagcagaataactaatatttaagcaagcaccaaaaataaaaatgcaaaagtagaattcttaacaaaaga |
23697227 |
T |
|
| Q |
301 |
gaattgtctatac |
313 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23697226 |
gaattgtctatac |
23697214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 23700587 - 23700648
Alignment:
| Q |
132 |
ataatgggagtcagtattccaagtggatccacatccatagcaaaattgattaccacacctgc |
193 |
Q |
| |
|
||||||||| | | ||||||||| || ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
23700587 |
ataatgggactgattattccaaggagaaccacagccatagcaaaattgattgccacacctgc |
23700648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University