View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_34 (Length: 324)

Name: NF10579_low_34
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_34
NF10579_low_34
[»] chr3 (12 HSPs)
chr3 (121-324)||(4871583-4871762)
chr3 (214-323)||(4826456-4826560)
chr3 (185-324)||(4860800-4860935)
chr3 (185-324)||(4880807-4880942)
chr3 (121-324)||(4845824-4846003)
chr3 (214-324)||(4835197-4835302)
chr3 (214-324)||(4856502-4856607)
chr3 (214-324)||(4878237-4878342)
chr3 (214-324)||(4852531-4852636)
chr3 (216-324)||(4841883-4841985)
chr3 (12-48)||(4856675-4856711)
chr3 (12-48)||(4878410-4878446)
[»] chr7 (1 HSPs)
chr7 (198-324)||(21703710-21703835)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 121 - 324
Target Start/End: Complemental strand, 4871762 - 4871583
Alignment:
Q  121 ttgaacatttttaatcatcaactagttttccaaatgcatggaaccgacgtgtgtaacagtgttgtgttgaatgattgaattcatacaaaattttgacttt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||               |||||||||||||||||||| |||   |||||     
T  4871762 ttgaacatttttaatcatcaactagttttccaaatgcatggaacctacgtgt---------------tgaatgattgaattcatacacaat---gactta 4871681  T
Q  221 gattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatcacttctt 320  Q
    ||||||||||| |||||||||||||||||||||||  |||||| |||||||||  ||  ||||||||||||||| ||||| |||||||||||||||||||    
T  4871680 gattgaccataaactcacattgagtctctaactag--tataaagccagttaac--tccatatgtattatgcacc-aacac-aataataatatcacttctt 4871587  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 4826560 - 4826456
Alignment:
Q  214 tgactttgattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatc 313  Q
    |||||| ||||||||||| |||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  4826560 tgacttagattgaccataaactcacattgagtctctaactag--tataaaaccagttaac--tctctatgtattatgcacc-aacactaataataatatc 4826466  T
Q  314 acttcttaaa 323  Q
    ||||||||||    
T  4826465 acttcttaaa 4826456  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 324
Target Start/End: Complemental strand, 4860935 - 4860800
Alignment:
Q  185 tgttgaatgattgaattcatacaaaattttgactttgattgaccatagactcacattgagtctctaactagtatataaaaccag-ttaacgatctctatg 283  Q
    |||||||| ||| ||||| | || |||||| |||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||  || |||||    
T  4860935 tgttgaataattcaattcgtgcacaattttaactttgattgacgatagactcacattgagtctctaactag--tataaaaccagtttaac--tccctatg 4860840  T
Q  284 tattatgcaccaaacactaataataatatcacttcttaaaa 324  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  4860839 tattatgcacc-aacactaataattatatcacttcttaaaa 4860800  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 324
Target Start/End: Complemental strand, 4880942 - 4880807
Alignment:
Q  185 tgttgaatgattgaattcatacaaaattttgactttgattgaccatagactcacattgagtctctaactagtatataaaaccag-ttaacgatctctatg 283  Q
    |||||||| ||| ||||| | || |||||| |||||||||||| |||||||||||||||||||||||||||  ||||||||||| |||||  || |||||    
T  4880942 tgttgaataattcaattcgtgcacaattttaactttgattgacgatagactcacattgagtctctaactag--tataaaaccagtttaac--tccctatg 4880847  T
Q  284 tattatgcaccaaacactaataataatatcacttcttaaaa 324  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  4880846 tattatgcacc-aacactaataattatatcacttcttaaaa 4880807  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 121 - 324
Target Start/End: Complemental strand, 4846003 - 4845824
Alignment:
Q  121 ttgaacatttttaatcatcaactagttttccaaatgcatggaaccgacgtgtgtaacagtgttgtgttgaatgattgaattcatacaaaattttgacttt 220  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||               |||||||||||||||||||| |||   |||||     
T  4846003 ttgaacattattaatcatcaactagttttccaaatgcatggaacctacgtgt---------------tgaatgattgaattcatacacaat---gactta 4845922  T
Q  221 gattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatcacttctt 320  Q
    ||||||||| | | |||||||||||||||||||||  |||||| |||||||||  |  |||||||||||||||| ||||| |||||||||||||||||||    
T  4845921 gattgaccaaaaaatcacattgagtctctaactag--tataaagccagttaac--tacctatgtattatgcacc-aacac-aataataatatcacttctt 4845828  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 4835302 - 4835197
Alignment:
Q  214 tgactttgattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatc 313  Q
    |||||||||||||||||| |||||| |||||||||||| |||  ||||||||||||||||  ||  ||||||||||||||| ||||||||||||||||||    
T  4835302 tgactttgattgaccataaactcactttgagtctctaattag--tataaaaccagttaac--tccatatgtattatgcacc-aacactaataataatatc 4835208  T
Q  314 acttcttaaaa 324  Q
    |||||||||||    
T  4835207 acttcttaaaa 4835197  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 4856607 - 4856502
Alignment:
Q  214 tgactttgattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatc 313  Q
    |||||| ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||  ||  ||||||||||||||| |||||||||||| |||||    
T  4856607 tgacttagattgaccataaactcacattgagtctctaactag--tataaaaccagtatac--tccatatgtattatgcacc-aacactaataattatatc 4856513  T
Q  314 acttcttaaaa 324  Q
    |||||||||||    
T  4856512 acttcttaaaa 4856502  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 4878342 - 4878237
Alignment:
Q  214 tgactttgattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatc 313  Q
    |||||| ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||  ||  ||||||||||||||| |||||||||||| |||||    
T  4878342 tgacttagattgaccataaactcacattgagtctctaactag--tataaaaccagtatac--tccatatgtattatgcacc-aacactaataattatatc 4878248  T
Q  314 acttcttaaaa 324  Q
    |||||||||||    
T  4878247 acttcttaaaa 4878237  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 324
Target Start/End: Complemental strand, 4852636 - 4852531
Alignment:
Q  214 tgactttgattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatc 313  Q
    |||||| ||| ||||||| |||||||||||||||||||||||  ||||||||||||  ||  ||  ||||||||||||||| |||||||||||| |||||    
T  4852636 tgacttagatcgaccataaactcacattgagtctctaactag--tataaaaccagtatac--tccatatgtattatgcacc-aacactaataattatatc 4852542  T
Q  314 acttcttaaaa 324  Q
    |||||||||||    
T  4852541 acttcttaaaa 4852531  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 216 - 324
Target Start/End: Complemental strand, 4841985 - 4841883
Alignment:
Q  216 actttgattgaccatagactcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcaccaaacactaataataatatcac 315  Q
    |||| ||||||||||| ||||||||||||||||||| |||  |||||||||||||||   ||  ||||||||||||||| ||||| ||||||||||||||    
T  4841985 acttagattgaccataaactcacattgagtctctaattag--tataaaaccagttaa--ttccatatgtattatgcacc-aacac-aataataatatcac 4841892  T
Q  316 ttcttaaaa 324  Q
    |||||||||    
T  4841891 ttcttaaaa 4841883  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 4856711 - 4856675
Alignment:
Q  12 aaaggattggtaggtactgatcatcaactagtagcaa 48  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  4856711 aaaggataggtagggactgatcatcaactagtagcaa 4856675  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 4878446 - 4878410
Alignment:
Q  12 aaaggattggtaggtactgatcatcaactagtagcaa 48  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  4878446 aaaggataggtagggactgatcatcaactagtagcaa 4878410  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 324
Target Start/End: Original strand, 21703710 - 21703835
Alignment:
Q  198 aattcatacaaaattttgactttgattgaccatag----actcacattgagtctctaactagtatataaaaccagttaacgatctctatgtattatgcac 293  Q
    |||||||||||||||| || ||||||||||||||     |||| ||||||||||||||||||||||  ||||| ||||||  |  |||||| ||||||||    
T  21703710 aattcatacaaaatttggagtttgattgaccatacgcacactcccattgagtctctaactagtata--aaaccggttaac--ttcctatgtcttatgcac 21703805  T
Q  294 caaacactaataataatatcacttcttaaaa 324  Q
    ||| |||||||| ||||||||||||||||||    
T  21703806 caa-cactaatattaatatcacttcttaaaa 21703835  T

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