View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_35 (Length: 323)
Name: NF10579_low_35
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_35 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 25802033 - 25802339
Alignment:
| Q |
1 |
aatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802033 |
aatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaata |
25802132 |
T |
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| Q |
101 |
ggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccattttacacaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802133 |
ggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccattttacacaaaat |
25802232 |
T |
|
| Q |
201 |
gcacctttcagttcatgcaaattccaccaggaaacacgccgcgttattgcaacgcatgcgaaaaggacgtgaacgggtttgtttaccactgcaaatcctg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802233 |
gcacctttcagttcatgcaaattccaccaggaaacacgctgcgttattgcaacgcatgcgaaaaggacgtgaacgggtttgtttaccactgcaaatcctg |
25802332 |
T |
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| Q |
301 |
tgggttc |
307 |
Q |
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||||||| |
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| T |
25802333 |
tgggttc |
25802339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 25816126 - 25816332
Alignment:
| Q |
1 |
aatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaata |
100 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| || |
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| T |
25816126 |
aatgaaatacaacgagatatcacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggttgcaacgaagta |
25816225 |
T |
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| Q |
101 |
ggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccattttacacaaaat |
200 |
Q |
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||||||||||||||||||||||||||||| || ||| | |||||||||||||||||| |||||||||| ||||||||||||||| | || |||||||||| |
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| T |
25816226 |
ggcataggttcacgttacaaatgcagcatttgtgacaatgaccttcacacacactgcacaataccttctaccacactcttccatgcgttctacacaaaat |
25816325 |
T |
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| Q |
201 |
gcacctt |
207 |
Q |
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||||||| |
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| T |
25816326 |
gcacctt |
25816332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 25816366 - 25816403
Alignment:
| Q |
266 |
gacgtgaacgggtttgtttaccactgcaaatcctgtgg |
303 |
Q |
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| T |
25816366 |
gacgtgaacgggtttgtataccactgcaaatcatgtgg |
25816403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 112498 - 112192
Alignment:
| Q |
1 |
aatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaata |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
112498 |
aatgaaatacagtgagatatcacatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgatggctgcaaagaaata |
112399 |
T |
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| Q |
101 |
ggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccatccattttacacaaaat |
200 |
Q |
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||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
112398 |
ggcatcgattcacgttaaaaatgcagcatctgcgactacgaccttcatacacactgcgcaataccttccaccacactcttcgatccattttacacaaaat |
112299 |
T |
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| Q |
201 |
gcacctttcagttcatgcaaattccaccaggaaacacgccgcgttattgcaacgcatgcgaaaaggacgtgaacgggtttgtttaccactgcaaatcctg |
300 |
Q |
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||||||| || ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
112298 |
gcaccttccaattcatgcaaatcccaccaggaaacacgccgcattactgcaacgcatgcgaaaaggatgtgaacgggtttgtttaccactgcaaatcctg |
112199 |
T |
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| Q |
301 |
tgggttc |
307 |
Q |
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||||||| |
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| T |
112198 |
tgggttc |
112192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 12530521 - 12530663
Alignment:
| Q |
7 |
atacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgacggctgcaaagaaataggcata |
106 |
Q |
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||||| ||||||||| ||||| ||||| | |||||| ||||||| ||| | ||| ||| |||||||||||||| || |||||||||||||| |||||| |
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| T |
12530521 |
atacaatgagatatctcattttagccatcaaaaacataaactaacatttcaacactccgagtttccattcaaatgtgatggctgcaaagaaattggcata |
12530620 |
T |
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| Q |
107 |
ggttcacgttacaaatgcagcatctgcgactacgaccttcaca |
149 |
Q |
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| T |
12530621 |
ggttcgcgttacagctgcaacatttgtgactatgatcttcaca |
12530663 |
T |
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