View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_36 (Length: 320)
Name: NF10579_low_36
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 15802106 - 15801803
Alignment:
| Q |
1 |
aacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaa |
100 |
Q |
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| T |
15802106 |
aacagcgatgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaa |
15802007 |
T |
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| Q |
101 |
tcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaaaagttattgtaac |
200 |
Q |
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| T |
15802006 |
tcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacacaaaccagaatacgacaggaaaagttattgtaac |
15801907 |
T |
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| Q |
201 |
accatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacattatgagtttgatacgcaaagtgactaca |
300 |
Q |
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| T |
15801906 |
accatcatggaatataaccggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacatgatgagtttgatacgcaaagtgactaca |
15801807 |
T |
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| Q |
301 |
gaat |
304 |
Q |
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|||| |
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| T |
15801806 |
gaat |
15801803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 8 - 303
Target Start/End: Complemental strand, 15794300 - 15794005
Alignment:
| Q |
8 |
atgatcatgacaatgtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctca |
107 |
Q |
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| T |
15794300 |
atgatcatgatacggtttatgggttctatgattgtcggggtgacatcacaggaagtttctgtcaattttgtatcaacactgttgttagagatattgcaaa |
15794201 |
T |
|
| Q |
108 |
acgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaaaagttattgtaacaccatca |
207 |
Q |
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| T |
15794200 |
atattgtcccaacagtgtctcagctatgatatggtatgatttatgcatcatgggttacactaaccagaatccctcgggaagagttattgtaactccatca |
15794101 |
T |
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| Q |
208 |
tggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacattatgagtttgatacgcaaagtgactacagaa |
303 |
Q |
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| T |
15794100 |
tggaatgtaaccggatctaaaatcgttaaagactcgacagaacttgcgaaatctgagaataacatgatgagtttgatacgaaaagtgacgacagaa |
15794005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 15807704 - 15807425
Alignment:
| Q |
22 |
gtttatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaaca |
121 |
Q |
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| T |
15807704 |
gtttatgggttctatgattgtctaggtcctaacacaagaagtttctgtcaattttgcatcaacactgcttttagagaaattgcaaaatattgtcccaaca |
15807605 |
T |
|
| Q |
122 |
gtgtttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactgg |
221 |
Q |
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| T |
15807604 |
gtgtctcggctattatatggtatgatgtatgcatcatgggttatactaaccagaatccctcaggaagagtttttctagaaccatcatggaatgtaaccgg |
15807505 |
T |
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| Q |
222 |
atccagaaacgttaaggactcaacagaacttgggaaagctgagaataacattatgagtttgatacgcaaagtgactacag |
301 |
Q |
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| T |
15807504 |
atccaaaaacgttaaggactcaacagaacttgggaaagctgagaatagcatgacgagtttgatacgcaaagtgactacag |
15807425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 15815562 - 15815327
Alignment:
| Q |
25 |
tatgggttatacggttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtg |
124 |
Q |
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| T |
15815562 |
tatggattctacgattgtcgtggtgacgtaacaggaagtttctgtcaattttgtatcaacgctgctgttagagcgatcgctcaatgttgtcccaatggcg |
15815463 |
T |
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| Q |
125 |
tttcggctttgatatggtatgatgtatgcgtcatgggttacactaaccagaatacgacaggaaaagttattgtaacaccatcatggaatataactggatc |
224 |
Q |
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| T |
15815462 |
tctcggctatgatatggtatgacatatgtgtcatcggttattctgaccataatacatcaggaaaaatttctgttaccccatcatggaatttaaccggaac |
15815363 |
T |
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| Q |
225 |
cagaaacgttaaggactcaacagaacttgggaaagc |
260 |
Q |
| |
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| T |
15815362 |
caaaaacacgaaggactcaactgaacttgagaaagc |
15815327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 15700313 - 15700230
Alignment:
| Q |
39 |
ttgtcgaggtgacatcacaggaagtttctgccgattctgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacag |
122 |
Q |
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|||||| | |||| |||||||||||||||| | ||| ||||||||||||||||| | |||||| ||||||||||||| |||||| |
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| T |
15700313 |
ttgtcgggctgacgtcacaggaagtttctgtcaattttgtatcaacactgctgtcaaagaaattgctcaacgttgtcttaacag |
15700230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 15724886 - 15724810
Alignment:
| Q |
184 |
ggaaaagttattgtaacaccatcatggaatataactggatccagaaacgttaaggactcaacagaacttgggaaagc |
260 |
Q |
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| T |
15724886 |
ggaaaagttgtcgtaacaccgtcatggaatattactggctccaatagcgtaaaggactcaacagaaattgggaaagc |
15724810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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