View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_37 (Length: 319)
Name: NF10579_low_37
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_37 |
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| [»] scaffold0097 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 48484025 - 48483746
Alignment:
| Q |
22 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484025 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccag |
48483926 |
T |
|
| Q |
122 |
taaaaggcatgtcatctacatttaatcttttctttggtctgactgtttttgctgtattattacattatatcaaattcttcaggaagtagtaacttatgga |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483925 |
taaaaggcatgtcatctacatttaatcttttctttggtctgactgtttttgctgtattattacattatatcaaattcttcaggaagtagtaacttatgga |
48483826 |
T |
|
| Q |
222 |
tccaccgcaataattcttcagtgagaaatatgcaattttccattcatatcatgattggcttgactcaatcacgtactaac |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
48483825 |
tccaccgcaataattcttcagtgagaaatatgcaattttccattcatatcatgattggcttgactcgatcacgtactaac |
48483746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 10159 - 10264
Alignment:
| Q |
22 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccag |
121 |
Q |
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||||| |||||||||||| || ||||||| |||||||||| ||||||| |||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
10159 |
caagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtccag |
10258 |
T |
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| Q |
122 |
taaaag |
127 |
Q |
| |
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|||||| |
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| T |
10259 |
taaaag |
10264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 1177 - 1289
Alignment:
| Q |
22 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccag |
121 |
Q |
| |
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||||| |||||||||||| || ||||||| ||||||||||| ||| || |||||| || |||||||| ||||||||||||||||| ||||| ||| ||| |
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| T |
1177 |
caagaatgctatggtgcagagcatgttcatgattttacttcttggattc-tagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtacag |
1275 |
T |
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| Q |
122 |
taaaaggcatgtca |
135 |
Q |
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||||||||| |||| |
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| T |
1276 |
taaaaggcacgtca |
1289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 1478 - 1371
Alignment:
| Q |
19 |
catcaagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtc |
118 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||| || |||| |||||| | |||||| | ||||||||||||| || | ||| |||| |
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| T |
1478 |
catcaagaatgctatggtgcaaaatatgttcaagattttacttcttgagtttttagagtattcgaaacttctaatgttgaaagagattgtttcctttgtc |
1379 |
T |
|
| Q |
119 |
cagtaaaa |
126 |
Q |
| |
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|||||||| |
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|
| T |
1378 |
cagtaaaa |
1371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 20706085 - 20706190
Alignment:
| Q |
22 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccag |
121 |
Q |
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||||| |||||||||||| || ||||||| |||||||||| ||||||| |||||| || |||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
20706085 |
caagaatgctatggtgcagagcatgttcaggattttacttattgggtttctagagtatgcgaaactcctgatgttgaaagagagtgttgcctttgtccag |
20706184 |
T |
|
| Q |
122 |
taaaag |
127 |
Q |
| |
|
|||||| |
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|
| T |
20706185 |
taaaag |
20706190 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 42559369 - 42559287
Alignment:
| Q |
22 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagaga |
104 |
Q |
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||||| ||||||||||||||| ||||||| ||||||||||| | ||||||||||| | ||||||||| |||||||||||||| |
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| T |
42559369 |
caagaatgctatggtgcaaagcatgttcaggattttacttcttaggtttgtagagcatttgaaactcctgatgttgaaagaga |
42559287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 20856994 - 20857074
Alignment:
| Q |
22 |
caagagtgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaaga |
102 |
Q |
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||||| |||||||||||| || |||||| ||||||||||| ||||||| |||||| || ||||||| ||||||||||| |
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| T |
20856994 |
caagaatgctatggtgcagagcatgttctggattttacttcttgggtttctagagtatgcgaaactcttaatgttgaaaga |
20857074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 128
Target Start/End: Original strand, 10036560 - 10036660
Alignment:
| Q |
28 |
tgctatggtgcaaagaatgttcaagattttacttcctgggtttgtagagtgtgtgaaactccagatgttgaaagagagtgctgcctctgtccagtaaaag |
127 |
Q |
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||||||||||||||| |||| || ||||||||||| ||||| || ||||| || ||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
10036560 |
tgctatggtgcaaagcatgtccaggattttacttcttgggtatgcagagtatgcgaaacccctgatgttgaaagagagtgctgcctttgtccagtaaaag |
10036659 |
T |
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| Q |
128 |
g |
128 |
Q |
| |
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| |
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|
| T |
10036660 |
g |
10036660 |
T |
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