View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_38 (Length: 319)
Name: NF10579_low_38
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_38 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 36263560 - 36263878
Alignment:
| Q |
1 |
tagaagataacttgatcctcaataagcttgtttgcatccaagacgctctgtggatcaaccccaaaaatctcagcaataagttcaggatattctccttcgg |
100 |
Q |
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| T |
36263560 |
tagaagataacttgatcctcaataagcttgtttgcatccaagacgctctgtgaatcaaccccaaaaatctcagcaataagttcaggatattctccttcgg |
36263659 |
T |
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| Q |
101 |
agaccaggtatgtaagaatatacttgaatccattttcaatttgcttggaggtaggacaagcacacctgagtggaacatgcatattgagccctgcagtgag |
200 |
Q |
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| T |
36263660 |
agaccaggtatgtaagaatatacttgaatccattttcaatttgcttggaggtaggacaagcacacctgagtggaacatgcatattgagccctgcagtgag |
36263759 |
T |
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| Q |
201 |
gtttgtgagtccatatatattctgagcatcaagagcctgacatgttgtgagtgactcataggtgttattgacaagagtgaagtagttttcatccacagtc |
300 |
Q |
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| T |
36263760 |
gtttgtgagtccatatatattctgagcatcaagagcctgacatgttgtgagtgactcataggtgttattggcaagagtgaagtagttttcatcctcagtc |
36263859 |
T |
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| Q |
301 |
ttcaatgtgtatgaggaat |
319 |
Q |
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| T |
36263860 |
ttcaatgtgtatgaggaat |
36263878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 36255909 - 36256041
Alignment:
| Q |
64 |
aaaatctcagcaataagttcaggatattc----tccttcggagaccaggtatgtaagaatatacttgaatccattttcaatttgcttggaggtaggacaa |
159 |
Q |
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| T |
36255909 |
aaaagctcatcaataagttcaggatattcattctccttcagagaccaagtatgcaagaagatacttgaatccattttccatttgcttggagatggaccaa |
36256008 |
T |
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| Q |
160 |
gcaca--cctgagtggaacatgcatattgagcc |
190 |
Q |
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| T |
36256009 |
gcacacccctgagtggaacatgcaaattgagcc |
36256041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 36256049 - 36256115
Alignment:
| Q |
255 |
ctcataggtgttattgacaagagtgaag--tagttttcatccacagtcttcaatgtgtatgaggaat |
319 |
Q |
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| T |
36256049 |
ctcataggtgttattggcaagagtgaagtatagttttcatcctcagttttcaagatgtatcaggaat |
36256115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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