View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_4 (Length: 444)
Name: NF10579_low_4
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 23 - 436
Target Start/End: Original strand, 501791 - 502202
Alignment:
| Q |
23 |
aacattatacataggttgttttgattaatcagggtacaatcttgtgttatttctctctcatttggcacgcaagcctcaacattctcctctattttttcat |
122 |
Q |
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| T |
501791 |
aacattatacataggttgttttgattaatcagggtacaatcttgtgttatttctctctcatttggcacgcaagcctcaacattctcctctattttttcat |
501890 |
T |
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| Q |
123 |
cattgaaatatggaggaaagtcccaagttggtaagattttgctttccttgatgattgtaataacctttcagataacaaaatgttgtttatgaattatttg |
222 |
Q |
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| T |
501891 |
cattgaaatatggaggaaagtcccaagttggtaagattttgctttccttgatgattgtaataacatttcagataacaaaatgttgtttatgaattatttg |
501990 |
T |
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| Q |
223 |
atttaattttgtgtaggatttgtcatcttgttattatggatgtggagatcatgcatttgaaatggagcagaagaacacactaccaacacagagaatg--- |
319 |
Q |
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| T |
501991 |
-----attttgtgtaggatttgtcatcttgttattatggatgtggagatcatgcatttgaaatggagcagaagaacac---accaacacagagaatgtca |
502082 |
T |
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| Q |
320 |
---tcagtttcagatcacatgaatggatttcaatatcaaaccgagaaattcgatagctatgtgattgacatggatcccgccttctcttcaggcatcaaca |
416 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
502083 |
gtttcagtttcagatcacatgaatggatttcaatatccaaccgagaaattcgatagctatgtgattgacatggatgccgccttctcttcaggcatcaaca |
502182 |
T |
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| Q |
417 |
aagatagtagtgcctatgct |
436 |
Q |
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|||||||||||||| ||||| |
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| T |
502183 |
aagatagtagtgccaatgct |
502202 |
T |
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