View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_40 (Length: 317)
Name: NF10579_low_40
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 46833201 - 46833475
Alignment:
| Q |
27 |
ctctctcactcactcacacgtacatgttacctagcacttaccatggctaccatcaccaagtccaaaccttacatagatattgaacctgactacgacagca |
126 |
Q |
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| T |
46833201 |
ctctctcactcactcacacgtacatgttacctagcacttaccatggccaccatcaccaagtccaaaccttacatagatattgaacctgactacgacagca |
46833300 |
T |
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| Q |
127 |
gctcctcatccatcaccgtacctgaatcaacccgcagctggatgagtaacctcagcttcggaagccgccgccgtcgaagctctgtctccgtttcttccac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46833301 |
gctcctcatccatcaccgtacctgaatcaacccgcagctggatgagtaacctcagcttcggaagccgccgccgtcgaagctccgtctccgtttcttccac |
46833400 |
T |
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| Q |
227 |
caccacatacacctcttccgtattaggttccaacgctaagcctcataaggcaaaccaagttgcatgggaggctat |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46833401 |
caccacatacacctcttcagtattaggttccaacgctaagcctcataaggcaaaccaagttgcatgggaggctat |
46833475 |
T |
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