View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_43 (Length: 304)
Name: NF10579_low_43
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 11 - 293
Target Start/End: Complemental strand, 23597991 - 23597709
Alignment:
| Q |
11 |
taaaccaaaacacatacatattactaggatgctatttcaaaagagtccttgcaaaatcctgaaccacacataaattccattacaaaagttccgcttaatc |
110 |
Q |
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| T |
23597991 |
taaaccaaaacacatacatattactaggatgctatttcaaaagagtccttgcaaaatcctgaaccacacataaatcccattacaaaagttccgcttaatc |
23597892 |
T |
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| Q |
111 |
aacttcctcaattttggggccagcaccacttccactgccagcagcaggtccatcctcatccatggctcctccagcatcaccaccaacaccttgatacatc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
23597891 |
aacttcctcaattttggggccagcaccacttccactgccagcagcaggtccatcctcatccatggctcctccagcatcaccaccagcaccttgatacatc |
23597792 |
T |
|
| Q |
211 |
cttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatgtccatc |
293 |
Q |
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| T |
23597791 |
cttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgatttccatc |
23597709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 63 - 293
Target Start/End: Complemental strand, 23589087 - 23588857
Alignment:
| Q |
63 |
aaaatcctgaaccacacataaattccattacaaaagttccgcttaatcaacttcctcaattttggggccagcaccacttccactgccagcagcaggtcca |
162 |
Q |
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| T |
23589087 |
aaaatcatgaaccacccatcaatcccatgaacaaagtttagcttaatcaacttcctcaattttggggccagcaccgcttccactgccagctgtaggacca |
23588988 |
T |
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| Q |
163 |
tcctcatccatggctcctccagcatcaccaccaacaccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaa |
262 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23588987 |
tcctcatccatggctcctccagcatctccaccagcaccttgatacatccttgcaatgatagggttgcaaatgccctccagctccttcatcttgtcctcaa |
23588888 |
T |
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| Q |
263 |
attcatcagcctctccaagttgatgtccatc |
293 |
Q |
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|||||||||||||||||||||||| |||||| |
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| T |
23588887 |
attcatcagcctctccaagttgatttccatc |
23588857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 39984594 - 39984678
Alignment:
| Q |
197 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaag |
281 |
Q |
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| T |
39984594 |
caccttggtacatcttggcaatgatagggttgcagacaccttcaagttccttcatcttgtcctcaaactcatcagcctctgcaag |
39984678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 276
Target Start/End: Complemental strand, 8018633 - 8018554
Alignment:
| Q |
197 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctct |
276 |
Q |
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|||||||||||||| | |||||||| |||||||||| | ||| || ||||||||||| || ||||| |||||||||||| |
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| T |
8018633 |
caccttgatacatcttggcaatgattgggttgcaaaggctctcaagttccttcatcttatcttcaaactcatcagcctct |
8018554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 8101615 - 8101687
Alignment:
| Q |
197 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatc |
269 |
Q |
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||||||| |||||| |||||||||| ||||| || || ||| ||||||||||||||||| ||||| ||||| |
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| T |
8101615 |
caccttggtacatctttgcaatgattgggttacagattgtctcaagctccttcatcttgtcttcaaactcatc |
8101687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 286
Target Start/End: Complemental strand, 17706893 - 17706804
Alignment:
| Q |
197 |
caccttgatacatccttgcaatgatagggttgcaaataccctccagctccttcatcttgtcctcaaattcatcagcctctccaagttgat |
286 |
Q |
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||||||| |||||| | ||||||||||||||||| | ||| || | |||||||||||||||||||| ||||| |||||| |||| |||| |
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| T |
17706893 |
caccttggtacatcttggcaatgatagggttgcagacaccttctggttccttcatcttgtcctcaaactcatctgcctctgcaagctgat |
17706804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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