View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_44 (Length: 301)
Name: NF10579_low_44
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 39325924 - 39325651
Alignment:
| Q |
8 |
gttgctatacatatatgaagcatatacatcttgctttattaggttagggacatcaaaatgtcatgttttttctttcataatagtcaaatgtagtagaaaa |
107 |
Q |
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| T |
39325924 |
gttgctatacatatatgaagcatatacatcttgctttattaggttagggacatcaaaatgtcatgttttttctttcataatagtcaaatgtagtagaaaa |
39325825 |
T |
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| Q |
108 |
aggctcttataatttggatgagctagcctatcacaattataaaaacgtttttagaccatatctcatctaatttaatacg-tacacttaacatgctttcat |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39325824 |
aggctcttataatttggatgagctagcctatcacaattataaaaacgtttttagaccatatctcatctaatttaatacgatacacttaacatgctttcat |
39325725 |
T |
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| Q |
207 |
atggtcaagatatgataaatgaagcgtaacttgagtgattcaacaagtgactgaacaacttttatattatttta |
280 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39325724 |
atggttaagatatgataaatgaagcgtaacttgagtgattcaacaagtgactgaacaacttttatattatttta |
39325651 |
T |
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