View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_46 (Length: 300)
Name: NF10579_low_46
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 11591137 - 11590853
Alignment:
| Q |
1 |
gaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgc |
100 |
Q |
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| T |
11591137 |
gaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgc |
11591038 |
T |
|
| Q |
101 |
agaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatat |
200 |
Q |
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| T |
11591037 |
agaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatat |
11590938 |
T |
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| Q |
201 |
tcttcatttctgaacatcttcaatctcatgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaat |
285 |
Q |
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| T |
11590937 |
tcttcttttctgaatatcctcaatctaatgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaat |
11590853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 11646530 - 11646814
Alignment:
| Q |
1 |
gaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaactaccactgttgctgc |
100 |
Q |
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| T |
11646530 |
gaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaactaccactgttgctgc |
11646629 |
T |
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| Q |
101 |
agaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcatat |
200 |
Q |
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| T |
11646630 |
agaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataataaactgaaaaaactgaattcgtat |
11646729 |
T |
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| Q |
201 |
tcttcatttctgaacatcttcaatctcatgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaat |
285 |
Q |
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| T |
11646730 |
tcttcttttctgaatatcctcaatctgatgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaat |
11646814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 41833746 - 41833803
Alignment:
| Q |
228 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcatcacagttgctaat |
285 |
Q |
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| T |
41833746 |
atgtctcttacttggcatctggtttatttggctcaaaatgttcatcagagttgctaat |
41833803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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