View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_47 (Length: 299)

Name: NF10579_low_47
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_47
NF10579_low_47
[»] chr1 (4 HSPs)
chr1 (100-292)||(12190687-12190878)
chr1 (17-103)||(12190923-12191009)
chr1 (157-212)||(39367053-39367108)
chr1 (216-292)||(39367174-39367250)
[»] chr2 (4 HSPs)
chr2 (100-212)||(27150145-27150255)
chr2 (17-103)||(27150014-27150100)
chr2 (216-277)||(27150289-27150350)
chr2 (241-292)||(7703424-7703475)
[»] chr4 (3 HSPs)
chr4 (113-212)||(24557952-24558049)
chr4 (216-292)||(24558132-24558206)
chr4 (176-211)||(37744067-37744102)
[»] chr8 (1 HSPs)
chr8 (148-211)||(28247569-28247632)
[»] chr5 (1 HSPs)
chr5 (223-271)||(31571741-31571789)
[»] chr6 (3 HSPs)
chr6 (58-106)||(23904080-23904128)
chr6 (104-144)||(23904197-23904237)
chr6 (223-271)||(24631350-24631398)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 100 - 292
Target Start/End: Complemental strand, 12190878 - 12190687
Alignment:
Q  100 tttactgtttataaatattagcaacacagttattgcattatcaaaacttggtaaaattttacaatatcagagttagatggtcaaaaatgccaattgccaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12190878 tttactgtttataaatattagcaacacagttattgcattatgaaaacttggtaaaattttacaatatcagagttagatggtcaaaaatgccaattgccaa 12190779  T
Q  200 ctatgtggaaaaggtttaggaagtcttatgagtgagtgttgttattgttgaacaaga-aattaacatgatcctcgtgttttcctgttcatctct 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||  |||| ||||||||||||||    
T  12190778 ctatgtggaaaaggtttaggaagtcttatgagtgagtgttgttattgttgaacaagagttttaacatgttcct--tgttatcctgttcatctct 12190687  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 12191009 - 12190923
Alignment:
Q  17 aatcgttgaaccatttaaagaccataacatattttcctcgatggtactgaactcaaactttttagactgttttcattctctacttta 103  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12191009 aatcgttgaaccgtttaaagaccataacatattttcctcgatggtactgaactcaaactttttagactgttttcattctctacttta 12190923  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 39367053 - 39367108
Alignment:
Q  157 tttacaatatcagagttagatggtcaaaaatgccaattgccaactatgtggaaaag 212  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39367053 tttataatatcagagttagatggtcaaacatgccaattgccaactatgtggaaaag 39367108  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 39367174 - 39367250
Alignment:
Q  216 taggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctct 292  Q
    |||||||||||||||||||||||||||||||||||| ||    |||||||||| || ||||| ||||||||||||||    
T  39367174 taggaagtcttatgagtgagtgttgttattgttgaaaaaatgtttaacatgattcttgtgttgtcctgttcatctct 39367250  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 27150145 - 27150255
Alignment:
Q  100 tttactgtttataaatattagcaacacagttattgcattatcaaaacttggtaaaattttacaatatcagagttagatggtcaaaaatgccaattgccaa 199  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||   ||||||||||||||| ||||||||||||||    
T  27150145 tttattgtttataaatattagcaacacagttaatgcattatcaaaacttggtaatattttacaatat--tagttagatggtcaaacatgccaattgccaa 27150242  T
Q  200 ctatgtggaaaag 212  Q
    |||||||||||||    
T  27150243 ctatgtggaaaag 27150255  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 27150014 - 27150100
Alignment:
Q  17 aatcgttgaaccatttaaagaccataacatattttcctcgatggtactgaactcaaactttttagactgttttcattctctacttta 103  Q
    |||| ||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  27150014 aatctttgaaccgtttaaagaccatcacatattttcctcgctggtactaaactcaaactttttaggttgttttcattctctacttta 27150100  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 27150289 - 27150350
Alignment:
Q  216 taggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgtt 277  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  27150289 taggaagtcttatgagtgagtgttgttattgttgaacaagagtttaacatgatccttgtgtt 27150350  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 7703475 - 7703424
Alignment:
Q  241 ttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctct 292  Q
    ||||||||||||||||  ||||||||||||| ||||| ||||||||||||||    
T  7703475 ttattgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctct 7703424  T

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Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 24557952 - 24558049
Alignment:
Q  113 aatattagcaacacagttattgcattatcaaaacttggtaaaattttacaatatcagagttagatggtcaaaaatgccaattgccaactatgtggaaaag 212  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||  || ||||||||||||||||| |||| ||||||||||||||||||||||    
T  24557952 aatattagcaacacagataatgcattatcaaaacttggtaaaatttttca--atgagagttagatggtcaaacatgctaattgccaactatgtggaaaag 24558049  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 292
Target Start/End: Original strand, 24558132 - 24558206
Alignment:
Q  216 taggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctct 292  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||  |||| || |||||||||||    
T  24558132 taggaagtcttatgagtgagtgttgttattgttgaacaagagcttaacacgatcct--tgttgtcttgttcatctct 24558206  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 211
Target Start/End: Original strand, 37744067 - 37744102
Alignment:
Q  176 atggtcaaaaatgccaattgccaactatgtggaaaa 211  Q
    ||||||||| ||||||||||||||||||||||||||    
T  37744067 atggtcaaacatgccaattgccaactatgtggaaaa 37744102  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 28247569 - 28247632
Alignment:
Q  148 tggtaaaattttacaatatcagagttagatggtcaaaaatgccaattgccaactatgtggaaaa 211  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||| |||||    
T  28247569 tggtaaaattttacaaaatcatagttagatggtcaaacatgccaattgccatctatgtagaaaa 28247632  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 31571789 - 31571741
Alignment:
Q  223 tcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 271  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31571789 tcttatgagtgagtgttgttattgttgaacaagagtttaacatgatcct 31571741  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 23904080 - 23904128
Alignment:
Q  58 tggtactgaactcaaactttttagactgttttcattctctactttactg 106  Q
    ||||||| |||||||||| |||||  |||||||||||| ||||||||||    
T  23904080 tggtactaaactcaaactctttaggttgttttcattctatactttactg 23904128  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 23904197 - 23904237
Alignment:
Q  104 ctgtttataaatattagcaacacagttattgcattatcaaa 144  Q
    |||||||||||||| ||||||| ||||| ||||||||||||    
T  23904197 ctgtttataaatataagcaacatagttaatgcattatcaaa 23904237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 24631350 - 24631398
Alignment:
Q  223 tcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 271  Q
    ||||||||||||| |||||| |||||||||||||  |||| ||||||||    
T  24631350 tcttatgagtgagagttgttcttgttgaacaagagtttaatatgatcct 24631398  T

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