View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_48 (Length: 299)
Name: NF10579_low_48
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 10353088 - 10353361
Alignment:
| Q |
15 |
ttcacatggtaaatgtctaacatgtggggaaaaagttaaatccaaacaactagtaagggtgtttcttccatcttccaactgaaggtaattccataattta |
114 |
Q |
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| T |
10353088 |
ttcacatggtaaatgtccaacatgtggggaaaaggttaaatcgaaacaactagtaagggtgtttcttccatcttccaaccgaaggtaatttcataattta |
10353187 |
T |
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| Q |
115 |
taagttggttttaaataatattgtgatttaact-nnnnnnnnttacgactaaattgatatcacctattcaaataattaatgaattgatgctctaaaacct |
213 |
Q |
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| T |
10353188 |
taagttggttttaaatagtattgtgatttaaataaatttgtattacgactaaattgatattacctattcaaataattaataaattgatgctct-aaacct |
10353286 |
T |
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| Q |
214 |
aatacgaacataccttcattaatattaaaaagtattagaatgtgtatctattttcaatagattcctgaagttctt |
288 |
Q |
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| T |
10353287 |
aatacgaacatagcttcgttaatattaaacagtattagaatgtgtattaattttcaatagattcttgaagttctt |
10353361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 11824420 - 11824539
Alignment:
| Q |
24 |
taaatgtctaacatgtggggaaaaagttaaatccaaacaactagtaagggtgtttcttccatcttccaactgaaggtaattccataatttataagttggt |
123 |
Q |
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| T |
11824420 |
taaatgtccaacatgtggggaaaaggttaaaccgaaacaactagtaagggtgtttcttccatctttcaaccgaaggtaattccataatttataagttggt |
11824519 |
T |
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| Q |
124 |
tttaaataatattgtgattt |
143 |
Q |
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| T |
11824520 |
tttaaatagtattatgattt |
11824539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 11824578 - 11824706
Alignment:
| Q |
156 |
ttacgactaaattgatatcacctattcaaataattaatgaattgatgctctaaaacctaatacgaacataccttcattaatattaaaaagtattagaatg |
255 |
Q |
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|||| ||||||||||||| || |||||||| ||||||| ||||||| ||||||| | |||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
11824578 |
ttacaactaaattgatattacatattcaaaaaattaataaattgattctctaaa-cttaatacgaacatactttcattcatattaaaaagtattagaatg |
11824676 |
T |
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| Q |
256 |
tgtatctattttcaatagattcctgaagtt |
285 |
Q |
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| T |
11824677 |
tgtatcaattttcaatagattcctaaagtt |
11824706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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