View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_5 (Length: 439)
Name: NF10579_low_5
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 44343954 - 44343543
Alignment:
| Q |
18 |
aatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatctagtttttcca |
117 |
Q |
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| T |
44343954 |
aatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatctagtttttcca |
44343855 |
T |
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| Q |
118 |
gctcttgcctctgcatacatcttagcacttgcacgttacgcatttccatcatctccttctactacatcaaattcacaacaacaagagattttcaaaggaa |
217 |
Q |
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| T |
44343854 |
gctcttgcctctgcatacatcttagcacttgcacgttacgcatttccatcatctccttctactacatcaaattcacaacaacaagagattttccaagtaa |
44343755 |
T |
|
| Q |
218 |
gtagcatgttcagaatgtatgttattgttggaacaactattggcttgtttttgccactagcttatgttcttggagggtttgcaagaggtgatcaacatgc |
317 |
Q |
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| T |
44343754 |
gtagcatgttcagaatgtatattattgttggaacaactattggcttgtttttgccactagcttatgttcttggagggtttgcaagaggtgatcaacatgc |
44343655 |
T |
|
| Q |
318 |
tgtgcgttctgcaacaccgcatcttttcttgctttcttttcagatattgactgagaatattattagcagtttgtctctattttcaccacctgttagagct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44343654 |
tgtgcgttctgcaacaccgcatcttttcttgctttcttttcagatattgactgagaatattattagcagtttgtctctattttcaccacctgttagagct |
44343555 |
T |
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| Q |
418 |
ttggttcctatg |
429 |
Q |
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| T |
44343554 |
ttggttcctatg |
44343543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 39475242 - 39475151
Alignment:
| Q |
17 |
caatgatgggttcattacgtgtaatagagcttcaacttgtagcattcatattagttttctcagcaagtggtcttgttcctcttcttgatcta |
108 |
Q |
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|||||||||||||||||||||||||||| || ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
39475242 |
caatgatgggttcattacgtgtaatagaactacaacttgtagcctttgtattggttttctcagcaagtggtcttgtccctcttcttgatcta |
39475151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 39475036 - 39474987
Alignment:
| Q |
235 |
tatgttattgttggaacaactattggcttgtttttgccactagcttatgt |
284 |
Q |
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| T |
39475036 |
tatgttattgttggaacaattcttggattgttcttgcctctagcttatgt |
39474987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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