View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_51 (Length: 292)
Name: NF10579_low_51
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 19213708 - 19213981
Alignment:
| Q |
1 |
gtactcacatcatgcaataatggaagcatcagtggttgcaaggccagatgagaaatggggtgagtctccatgtgcatttgtgacattaaagccaagagta |
100 |
Q |
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| T |
19213708 |
gtactcacatcatgcaatattggaagcatcagtggttgcaaggccagatgagaaatggggtgagtctccatgtgcatttgtgacattaaagccaagagtg |
19213807 |
T |
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| Q |
101 |
gatagtagtaatgaaaagtgtttagttgaggatatattgagtttttgtaaggctaaggtgtcttcttatatggtcccaaaatcagttgtgtttggaccat |
200 |
Q |
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| T |
19213808 |
gatagtagtaatgaaaagtgtttagttgaggatatattgagtttttgtaaggctaagatgtcttcttatatggtcccaaaatcagttgtgtttggaccat |
19213907 |
T |
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| Q |
201 |
tacctaagactgctactgggaagatacagaagaatttgttgagggctaaggcaagggagatggggtctgtcaag |
274 |
Q |
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| T |
19213908 |
tacctaagacagctactgggaagatacagaagaatctgttgagggctaaggcaaaggagatggggtctgccaag |
19213981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 264
Target Start/End: Complemental strand, 50255796 - 50255559
Alignment:
| Q |
27 |
catcagtggttgcaaggccagatgagaaatggggtgagtctccatgtgcatttgtgacattaaagccaagagtagatagtagtaatgaaaagtgtttagt |
126 |
Q |
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| T |
50255796 |
catcagtggtcgctagaccagacgagaaatggggcgagtctccgtgtgcgtttgtgacattaaagccaggagtggataggagtaacgagcaacgtctagt |
50255697 |
T |
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| Q |
127 |
tgaggatatattgagtttttgtaaggctaaggtgtcttcttatatggtcccaaaatcagttgtgtttggaccattacctaagactgctactgggaagata |
226 |
Q |
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| T |
50255696 |
cgaggacatactgaagttctgtagggccaagatgcctacttattgggtaccgaaatcggttgtctttggaccgttacctaagacagctactgggaaggta |
50255597 |
T |
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| Q |
227 |
cagaagaatttgttgagggctaaggcaagggagatggg |
264 |
Q |
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| T |
50255596 |
cagaagcatctgctgagggctaaggcaaaggagatggg |
50255559 |
T |
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