View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_52 (Length: 283)
Name: NF10579_low_52
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_52 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 38826719 - 38826614
Alignment:
| Q |
11 |
gaagaacgtgacttgaagggaaaaataagtgtgtgttgtgaatgtgatgaatatgaataagaacgaggattgttcaaactcatatcttcctgaagaatta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
38826719 |
gaagaacgtgacttgaagggaaaaataagtgcgtgttgtgaatgtgatgaatatgaataagaacgaggattgttcaaactcatatctttctgaagaatta |
38826620 |
T |
|
| Q |
111 |
tgggca |
116 |
Q |
| |
|
|||||| |
|
|
| T |
38826619 |
tgggca |
38826614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 38825218 - 38825162
Alignment:
| Q |
209 |
gtatataagcttgatcaagaatggggtaaatggttagatgtaaaagatttgggtgat |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38825218 |
gtatataagcttgatcaagaatggggtaaatggttatatgtaaaagatttgggtgat |
38825162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 212 - 268
Target Start/End: Complemental strand, 38813314 - 38813258
Alignment:
| Q |
212 |
tataagcttgatcaagaatggggtaaatggttagatgtaaaagatttgggtgatgtt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
38813314 |
tataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtt |
38813258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 174
Target Start/End: Complemental strand, 38814219 - 38814094
Alignment:
| Q |
49 |
tgaatgtgatgaatatgaataagaacgaggattgttcaaactcatatcttcctgaagaattatgggcaattatattnnnnnnnctgaaaactacacttga |
148 |
Q |
| |
|
||||||||||| ||||||||||| | ||| |||||||||||| |||||| |||||| || |||| |||||||| ||||| ||||| |||| |
|
|
| T |
38814219 |
tgaatgtgatggatatgaataaggtagtggagtgttcaaactcaaatcttcttgaagatttgtgggtaattatatccaaaaaactgaacactacgattga |
38814120 |
T |
|
| Q |
149 |
tgttgttcgattccgcagtacttgta |
174 |
Q |
| |
|
||||||||||||||| |||| ||||| |
|
|
| T |
38814119 |
tgttgttcgattccgtagtatttgta |
38814094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 38826003 - 38825964
Alignment:
| Q |
132 |
ctgaaaactacacttgatgttgttcgattccgcagtacttgta |
174 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38826003 |
ctgaaaactacacttg---ttgttcgattccgcagtacttgta |
38825964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 35521051 - 35521107
Alignment:
| Q |
212 |
tataagcttgatcaagaatggggtaaatggttagatgtaaaagatttgggtgatgtt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
35521051 |
tataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtt |
35521107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 35548605 - 35548568
Alignment:
| Q |
212 |
tataagcttgatcaagaatggggtaaatggttagatgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35548605 |
tataagcttgatcaagaatggggtaaatggtttgatgt |
35548568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University