View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_53 (Length: 280)
Name: NF10579_low_53
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 21532080 - 21532347
Alignment:
| Q |
6 |
aatctccaagaacacgattcaaattactctgattctctgtaagttcttcatcaatcaaactctaatcattcagtaattctacttaatttatttaattaat |
105 |
Q |
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| T |
21532080 |
aatctccaagaacacgattcaaattactctgattctctgtaagttcttcatcaatcacactctaatcattcagtaattctacttaatttatttaattaat |
21532179 |
T |
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| Q |
106 |
caatcaaatttcttgtgattaggtttgttcgcatcatagcatgtgaattatgctgcagtacttgtaatccaaggcgcaagaaaaacatcaatgaagggat |
205 |
Q |
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| T |
21532180 |
caatcgaatttcttgtgattaggtttgttcgcatcatagcatgcgaattatgctgcagtacttgtaatccaaggcgcaagaaaaacatcaatgaagggaa |
21532279 |
T |
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| Q |
206 |
accgtttgaagatatggagtttcttgagaagcttggtgaaggtggtttcggtacagttttcctttgct |
273 |
Q |
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| T |
21532280 |
accgtttgaagatatggagtttcttgagaagcttggtgaaggtggttttggtacagttttccgttgct |
21532347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 32241858 - 32241924
Alignment:
| Q |
206 |
accgtttgaagatatggagtttcttgagaagcttggtgaaggtggtttcggtacagttttcctttgc |
272 |
Q |
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| T |
32241858 |
accgttagaaaatatggagtttcttgagatgcttggtgaaggaggtttcagtagagttttccgttgc |
32241924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 32241719 - 32241833
Alignment:
| Q |
29 |
ttactctgattctctgtaagttcttcatcaatcaaactctaatcattcagtaattctacttaatttatttaattaatcaatcaaatttcttgtgattagg |
128 |
Q |
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| T |
32241719 |
ttactccggttctctctaactttttcattaatcacacactaatcattcagtaattattgttaatttgtttaatt----aatccaatttcttgtgattagg |
32241814 |
T |
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| Q |
129 |
tttgttcgcatcatagcat |
147 |
Q |
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|||||| | ||||||||| |
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| T |
32241815 |
tttgtttgattcatagcat |
32241833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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