View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_54 (Length: 279)

Name: NF10579_low_54
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_54
NF10579_low_54
[»] chr3 (8 HSPs)
chr3 (3-269)||(24183374-24183640)
chr3 (3-231)||(53783406-53783633)
chr3 (111-259)||(13881153-13881303)
chr3 (7-220)||(52633396-52633610)
chr3 (114-220)||(37812963-37813069)
chr3 (13-68)||(24110072-24110127)
chr3 (143-208)||(29826085-29826150)
chr3 (129-185)||(365202-365258)
[»] chr6 (4 HSPs)
chr6 (6-220)||(2805195-2805406)
chr6 (3-220)||(13419294-13419512)
chr6 (3-261)||(35122280-35122543)
chr6 (3-261)||(33344349-33344609)
[»] chr1 (10 HSPs)
chr1 (5-219)||(35388694-35388909)
chr1 (3-179)||(26173574-26173751)
chr1 (3-258)||(44559932-44560191)
chr1 (147-220)||(27953455-27953528)
chr1 (23-198)||(1056384-1056557)
chr1 (7-75)||(12029786-12029854)
chr1 (142-220)||(9127066-9127144)
chr1 (6-55)||(38889202-38889251)
chr1 (175-218)||(26173185-26173228)
chr1 (3-75)||(27086568-27086639)
[»] chr8 (3 HSPs)
chr8 (5-247)||(27490345-27490591)
chr8 (3-226)||(23762103-23762328)
chr8 (5-220)||(40038391-40038602)
[»] chr7 (7 HSPs)
chr7 (3-261)||(15582114-15582377)
chr7 (6-69)||(8063093-8063156)
chr7 (110-219)||(8062361-8062470)
chr7 (125-261)||(34422972-34423111)
chr7 (175-260)||(1274037-1274126)
chr7 (23-75)||(1275786-1275838)
chr7 (25-54)||(24565702-24565731)
[»] chr4 (7 HSPs)
chr4 (24-206)||(6102818-6103000)
chr4 (7-101)||(21688089-21688184)
chr4 (5-72)||(24274886-24274953)
chr4 (23-184)||(28145295-28145456)
chr4 (90-205)||(41749123-41749238)
chr4 (5-72)||(35774457-35774524)
chr4 (32-138)||(38260919-38261026)
[»] scaffold0031 (1 HSPs)
scaffold0031 (7-220)||(106243-106457)
[»] chr2 (5 HSPs)
chr2 (28-219)||(32454800-32454992)
chr2 (3-261)||(6944606-6944867)
chr2 (19-103)||(4421637-4421725)
chr2 (3-53)||(1904693-1904743)
chr2 (149-215)||(36133176-36133242)
[»] chr5 (4 HSPs)
chr5 (3-205)||(33373389-33373591)
chr5 (3-227)||(35147874-35148098)
chr5 (6-193)||(31653219-31653404)
chr5 (3-75)||(35892197-35892269)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-220)||(243841-244045)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 269
Target Start/End: Original strand, 24183374 - 24183640
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaagaagtgtatacatacatatgtgagtgc 102  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24183374 tgccctctctaagcatatgatggaaagaaatgttaggattgtgctcctttaaagcaaaattcttcaccaacaagaagtgtatacatacatatgtgagtgc 24183473  T
Q  103 tctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccc 202  Q
    ||| || |||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  24183474 tctagatgttgaagaagatggaggacttctaaagaattcatctcacaaataacctgttgaatagagttgttgattaccaacatcaaaccatgataaaccc 24183573  T
Q  203 caaataactcagcaaaaaacacatctccccctcactagaagagaatcctgctatccaatatcctttg 269  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||    
T  24183574 caaataactcagcaaaaagcacatctctccctcactagaagagaatcctgctatccaatctcctttg 24183640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 53783406 - 53783633
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    |||||| |||||| |||||||||||| ||||||||| ||||||||  ||||||   |||   ||||||||||| ||||   |||||| ||||| | ||||    
T  53783406 tgccctatctaagtatatgatggaaataaatgttagaaatatgctaatttaaatataaaaaattcaccaacaaagaagcacatacatgcatatctaagtg 53783505  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
    |||  || |||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||    
T  53783506 ctccagatgttgaagaagatggagg--ttctaaagaatccatctcacaaataacctgctgaatagagttgttgatgaccaacatcaaaccatggtaaacc 53783603  T
Q  202 ccaaataactcagcaaaaaacacatctccc 231  Q
    |||||||||  |||||||| | ||||||||    
T  53783604 ccaaataacctagcaaaaagcgcatctccc 53783633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 259
Target Start/End: Original strand, 13881153 - 13881303
Alignment:
Q  111 ttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataac 210  Q
    ||||||||||||| | |||| |||||||    | |||||||||||  |||||||||||||||| ||||||||||||||||| |  ||||||||||||| |    
T  13881153 ttgaagaagatggagaacttttaaagaatatgtttcacaaataactcgctgaatagagttgttaattaccaacatcaaaccttggtaaaccccaaatagc 13881252  T
Q  211 tcagcaaaaaacaca--tctccccctcactagaagagaatcctgctatcca 259  Q
    ||| |||||||||||   || ||||||| |||||||||||||  |||||||    
T  13881253 tcaacaaaaaacacacccctacccctcattagaagagaatccaactatcca 13881303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 52633396 - 52633610
Alignment:
Q  7 ctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa--gaagtgtatacatacatatgtgagtgctc 104  Q
    |||||||| || ||| |||||| ||| ||| || |||||||| |||||||||||| | |||||||||||  |||   ||| | | |||| ||||||| ||    
T  52633396 ctctctaaacacatgttggaaaaaaaagtttgggatatgctcatttaaaccaaaaatattcaccaacaaaggaaacatatgcttgcataagtgagtggtc 52633495  T
Q  105 tcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacccca 204  Q
      || |||| ||||||||| ||| |||||||||| |  | |  ||||||||  | |||||| |  |||||||||||||||||||||||| ||| | ||||    
T  52633496 cagatgttgcagaagatggaggatttctaaagaaactgttttgcaaataactcgttgaatataaatgttgattaccaacatcaaaccatgataga-ccca 52633594  T
Q  205 aataactcagcaaaaa 220  Q
    |||||||||| |||||    
T  52633595 aataactcagtaaaaa 52633610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 220
Target Start/End: Complemental strand, 37813069 - 37812963
Alignment:
Q  114 aagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataactca 213  Q
    ||||||||||  |||||||||| || | ||||||||||||||| | |||| |||||  |||||||| |||| |||| |||  |||||||||||||||| |    
T  37813069 aagaagatggaagacttctaaataatctatctcacaaataacccgttgaagagagtcattgattacaaacaacaaatcatggtaaaccccaaataactta 37812970  T
Q  214 gcaaaaa 220  Q
    | |||||    
T  37812969 gtaaaaa 37812963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 24110072 - 24110127
Alignment:
Q  13 aagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttca 68  Q
    ||||||||| |||||||||||||||| |||||| |||||||| |||||| ||||||    
T  24110072 aagcatatgttggaaagaaatgttagaaatatgttcctttaatccaaaaatcttca 24110127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 29826085 - 29826150
Alignment:
Q  143 tctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaata 208  Q
    |||| |||||||| || ||||||||||||||||| |||||| ||||||||| |||||  |||||||    
T  29826085 tctcgcaaataacttgttgaatagagttgttgatgaccaacttcaaaccatgataaataccaaata 29826150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Original strand, 365202 - 365258
Alignment:
Q  129 ttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacat 185  Q
    ||||||| |||| |||||||||||||| |  |||||||| |||||||||||||||||    
T  365202 ttctaaaaaacctatctcacaaataacattttgaatagaattgttgattaccaacat 365258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 220
Target Start/End: Complemental strand, 2805406 - 2805195
Alignment:
Q  6 cctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaagaagtgtatacatacatatgtgagtgctct 105  Q
    |||||||||| | |||||||||||||||||||| ||||| |||||||||||||||| |||||||   ||||||| ||| |||| ||||||||||||||||    
T  2805406 cctctctaagaacatgatggaaagaaatgttagcaatatactcctttaaaccaaaaatcttcac---caagaagcgtaaacatgcatatgtgagtgctct 2805310  T
Q  106 cgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaa 205  Q
     || |||||||||||||| ||||||| ||||||    |||| ||||||||||  ||| ||||||| || ||||| |||||||||||||  ||||| |||     
T  2805309 agatgttgaagaagatggaggacttccaaagaatttctctcgcaaataacctattgattagagttattcattacaaacatcaaaccatggtaaacaccag 2805210  T
Q  206 ataactcagcaaaaa 220  Q
    ||| |||||||||||    
T  2805209 atagctcagcaaaaa 2805195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 13419294 - 13419512
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||| ||| | |||||| ||||| ||||||||||||||||| |||||| ||||||||||||| |||   ||||||| |||||| |||||    
T  13419294 tgccctctcgaagcacatgttcgaaagagatgttgggaatatgctcctttaacccaaaaatcttcaccaacaaagaaacatatacatgcatatgagagtg 13419393  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     ||| ||  |||| |||||  |  ||||||||||||| | || |  ||||||||  | |||||||||||||||||| ||||||||||||||| |||||||    
T  13419394 atctagatcttgacgaagacagatgacttctaaagaatctattttgcaaataactcgttgaatagagttgttgattgccaacatcaaaccatgataaacc 13419493  T
Q  202 ccaaataactcagcaaaaa 220  Q
    ||||||| |||||||||||    
T  13419494 ccaaatagctcagcaaaaa 13419512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 35122543 - 35122280
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||| ||| | ||||||||||||| |||||| ||||||||| |||||| ||||||||||||| || | ||| ||||||||||| |||||    
T  35122543 tgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttcaccaacaaagaggcgtacacatacatatgagagtg 35122444  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     ||| |   |||||||||| |     ||||||||||| |  | |||||||||||  | |||||||||| |||||||||||||||||||||||  ||||||    
T  35122443 atctggctcttgaagaagacgaaatgcttctaaagaatctgtttcacaaataactcgttgaatagagtcgttgattaccaacatcaaaccatggtaaacc 35122344  T
Q  202 ccaaataactcagcaaaaaa-cacatctc---cccctcactagaagagaatcctgctatccaat 261  Q
    ||||||| ||||| |||||| | ||||||   ||| ||| |||||||||||||  |||||||||    
T  35122343 ccaaatagctcagaaaaaaagcgcatctcttgcccatcattagaagagaatccaactatccaat 35122280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 33344349 - 33344609
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||| ||| | ||||||||||||| |||||| ||||||||| |||||| ||||||||||||| || | ||| ||||||||||| |||||    
T  33344349 tgccctctcgaagcacatgttagaaagaaatgttacgaatatactcctttaacccaaaaatcttcaccaacaaagaggcgtacacatacatatgagagtg 33344448  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     ||| |   |||||||||| ||    |||||||||||    | |||||||||||  | |||||||||| |||||||||||||||||||||||  ||||||    
T  33344449 atctggctcttgaagaagacggaatgcttctaaagaatg--tttcacaaataactcgttgaatagagtcgttgattaccaacatcaaaccatggtaaacc 33344546  T
Q  202 ccaaataactcagcaaaaaacacatctc---cccctcactagaagagaatcctgctatccaat 261  Q
    ||||||| | ||| ||||| | ||||||   ||| ||| |||||||||||||  |||||||||    
T  33344547 ccaaatagcccagaaaaaagcgcatctcttgcccatcattagaagagaatccaactatccaat 33344609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 35388694 - 35388909
Alignment:
Q  5 ccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtgct 103  Q
    |||||||||| || ||| |||||||||||||||||||||| | | ||||||| |||  |||| |||||||| ||||||||| ||| |||||| | ||| |    
T  35388694 ccctctctaaacacatgttggaaagaaatgttaggaatatacacttttaaactaaagatctttaccaacaaagaagtgtatgcatgcatatgcgtgtggt 35388793  T
Q  104 ctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacccc 203  Q
    |  || |||||||||| ||| ||||||| | |||| | |||||||||||||| || |||||||||||  | ||||||||||||||||||| |||||| ||    
T  35388794 ccggatgttgaagaaggtggaggacttcaagagaatctatctcacaaataacatgttgaatagagtttcttattaccaacatcaaaccatgataaacacc 35388893  T
Q  204 aaataactcagcaaaa 219  Q
    ||| | ||||||||||    
T  35388894 aaaaagctcagcaaaa 35388909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 179
Target Start/End: Complemental strand, 26173751 - 26173574
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||| |||| |||||| |||||| |||||||| ||| || |||||    
T  26173751 tgccctctcgaagcatatgttggaaagaaatgttaggaatatgctcatttaacccaaaaatctttaccaacaaagaagcgtatacatgcatttgagagtg 26173652  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattac 179  Q
     ||| ||  ||||||||||||| |||||||||||||| |  | ||  |||||||  | ||||||||||||||||||||    
T  26173651 atctggatcttgaagaagatggaggacttctaaagaatctgtttcgtaaataactcgttgaatagagttgttgattac 26173574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 44560191 - 44559932
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||| ||| | |||||||||||||||||||||| | ||||| ||||||   ||||||||||| ||||  |||| || |||||| |||||    
T  44560191 tgccctctcgaagcacatgtttgaaagaaatgttaggaatatgcgcttttaacccaaaaaaattcaccaacaaagaagcatata-atgcatatgagagtg 44560093  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     | | ||  |||||||||| ||| ||||| ||||||  | || |  ||| ||||  | |||||||| ||||||||| |||||||||||||||  ||||||    
T  44560092 atttggatcttgaagaagacgggtgacttgtaaagattctattttgcaagtaactcgttgaatagaattgttgattgccaacatcaaaccatggtaaacc 44559993  T
Q  202 ccaaataactcagcaaaaaacacatc----tccccctcactagaagagaatcctgctatcc 258  Q
    | ||||| |||||||| |||||||||    | ||||||| ||||||||||||| |||||||    
T  44559992 ctaaatagctcagcaacaaacacatccccttgcccctcattagaagagaatccagctatcc 44559932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 27953455 - 27953528
Alignment:
Q  147 acaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataactcagcaaaaa 220  Q
    |||||||||||| ||||||||||||||||| ||||||||||||| || |||||| |||||||  ||||||||||    
T  27953455 acaaataacctgatgaatagagttgttgataaccaacatcaaacaatgataaacaccaaatatttcagcaaaaa 27953528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 198
Target Start/End: Original strand, 1056384 - 1056557
Alignment:
Q  23 tggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaagaagtgtatacatacatatgtgagtgctctcgacgttgaagaagatg 122  Q
    |||||| ||||||||||||||| ||| ||| |||||||| ||||||||||||  |||  ||| ||| || ||| | ||| |||  | ||| |||||||||    
T  1056384 tggaaataaatgttaggaatattctcttttgaaccaaaaatcttcaccaaca--aaggatatgcatgcaaatgcgtgtgatctgaatgttaaagaagatg 1056481  T
Q  123 ggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataa 198  Q
    |  || ||| || ||| |  | |||||||||||||| | |||| |||||||||| ||||||||||| |||| ||||    
T  1056482 gaagatttccaacgaatctctttcacaaataacctgttaaatatagttgttgataaccaacatcaatccatgataa 1056557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 12029786 - 12029854
Alignment:
Q  7 ctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa 75  Q
    ||||| ||||| ||| |||||| |||||||||||||||||| |||||| |||||| |||| ||||||||    
T  12029786 ctctcgaagcacatgttggaaataaatgttaggaatatgcttctttaacccaaaaatctttaccaacaa 12029854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Original strand, 9127066 - 9127144
Alignment:
Q  142 atctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataactcagcaaaaa 220  Q
    ||||| ||||||| ||  ||||| ||||| || ||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  9127066 atctcgcaaataatctattgaattgagttttttattacgaacatcaaaccatcataaacaccaaataactcaacaaaaa 9127144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 38889202 - 38889251
Alignment:
Q  6 cctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaa 55  Q
    ||||||||| |||||| || |||||||||||||||||| |||||||||||    
T  38889202 cctctctaaacatatgttgaaaagaaatgttaggaataagctcctttaaa 38889251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 26173228 - 26173185
Alignment:
Q  175 attaccaacatcaaaccataataaaccccaaataactcagcaaa 218  Q
    |||||||||||||||||||  ||||||||||||| |||||||||    
T  26173228 attaccaacatcaaaccatggtaaaccccaaatagctcagcaaa 26173185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 27086639 - 27086568
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa 75  Q
    ||||||||| ||| | ||| ||||||||||| ||| ||||||||| |||||| |||||| | |||||||||||    
T  27086639 tgccctctcgaagtacatgttggaaagaaatattatgaatatgct-ctttaatccaaaaatgttcaccaacaa 27086568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 27490345 - 27490591
Alignment:
Q  5 ccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtgct 103  Q
    ||||||||||||| ||| | |||||||||||||||||||||||| |||||||||||  ||| | ||||||| ||||||||| |||||||||| ||||| |    
T  27490345 ccctctctaagcacatgttagaaagaaatgttaggaatatgctcttttaaaccaaagatctccgccaacaaagaagtgtatgcatacatatgcgagtggt 27490444  T
Q  104 ctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacccc 203  Q
    || || ||| |||||||| | ||||||| | |||| | |||||  |||||||||| |||||| ||||  |  ||| |||| ||||||||| |||||| ||    
T  27490445 ctggatgttaaagaagatagaggacttccagagaatctatctcgtaaataacctgttgaatatagtttctttttatcaacttcaaaccatgataaacacc 27490544  T
Q  204 aaataactcagcaaaaaacacat---ctccccctcactagaagagaa 247  Q
    ||| | |||| |||||| |||||   || ||||||| ||||||||||    
T  27490545 aaagagctcaacaaaaagcacatcccctgcccctcattagaagagaa 27490591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 23762328 - 23762103
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgta-tacatacatatgtgagt 100  Q
    ||||||||||||||| ||| |  ||| |||||||| |||||||||||||||||| |||| ||||||||||| |||||| ||| ||||| |||||||||||    
T  23762328 tgccctctctaagcacatgctcaaaaaaaatgttaagaatatgctcctttaaactaaaaatcttcaccaacaaagaagcgtattacatgcatatgtgagt 23762229  T
Q  101 gctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaac 200  Q
    |  |  || | ||| |||||||  ||||||||| ||||    |||| ||||||||  | |||||| ||||||| | |||||||||||| ||||  | |||    
T  23762228 gacccagatgatgacgaagatgaaggacttctatagaatttgtctcgcaaataactcgttgaatatagttgtttaataccaacatcaagccattgttaac 23762129  T
Q  201 cccaaataactcagcaaaaaacacat 226  Q
    |||||||| |||||||||||||||||    
T  23762128 cccaaatagctcagcaaaaaacacat 23762103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 40038391 - 40038602
Alignment:
Q  5 ccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtgct 103  Q
    ||||||||||||| ||| ||||||||||||||| |||||| |||||||||||||||  ||||||||||| |||||  |||| ||| ||||||||||||      
T  40038391 ccctctctaagcacatgttggaaagaaatgttaagaatattctcctttaaaccaaagatcttcaccaacaaagaaacgtatccatgcatatgtgagtg-- 40038488  T
Q  104 ctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacccc 203  Q
       || ||||||||||   | ||||||||| |||| | ||||| ||| | ||||| |||||| ||||  | ||||||||| ||||| ||| |||||| ||    
T  40038489 ---gatgttgaagaaggcagaggacttctagagaatctatctcgcaagtcacctgttgaataaagtttcttattaccaacgtcaaatcatgataaacacc 40038585  T
Q  204 aaataactcagcaaaaa 220  Q
    ||| | |||||||||||    
T  40038586 aaagagctcagcaaaaa 40038602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 15582377 - 15582114
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||| ||| |||| ||||||||||  ||||||||||||||| |||||| ||||||||||||| || |  || |||| |||||| |||||    
T  15582377 tgccctctcgaagcacatgttggagagaaatgttacaaatatgctcctttaacccaaaaatcttcaccaacaaagaggcatacacatgcatatgagagtg 15582278  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     ||| ||  |||||||||| ||  |||||| ||||||    | || |||||||   | ||||||||||||||||||||||||||||||||||  ||||||    
T  15582277 atctagatcttgaagaagacggaagacttccaaagaatatgtttcgcaaataattcgttgaatagagttgttgattaccaacatcaaaccatggtaaacc 15582178  T
Q  202 ccaaataactcagcaaaaaacacatc----tccccctcactagaagagaatcctgctatccaat 261  Q
    ||||||| |||||| |||| | ||||    | ||| ||| ||||||||||||| ||||||||||    
T  15582177 ccaaatagctcagcgaaaagcgcatccccttgcccatcattagaagagaatccagctatccaat 15582114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 8063156 - 8063093
Alignment:
Q  6 cctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcac 69  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  8063156 cctctctaagcacatgttggaaagaaatgttaggaatatgctcctttaaaccaaaaatcttcac 8063093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 8062470 - 8062361
Alignment:
Q  110 gttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataa 209  Q
    ||||||||||  || ||||||||| |||| |||||||  |||||||||| |||||||||||  | |||||||||| |||||||| |||||| ||||| |     
T  8062470 gttgaagaaggcggaggacttctagagaatccatctcgtaaataacctgttgaatagagtttcttattaccaacaccaaaccatgataaacaccaaagag 8062371  T
Q  210 ctcagcaaaa 219  Q
    ||||||||||    
T  8062370 ctcagcaaaa 8062361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 261
Target Start/End: Complemental strand, 34423111 - 34422972
Alignment:
Q  125 ggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataactcagcaaaaaacac 224  Q
    |||||||||||||| |  | || ||||||||  | || ||| ||||| |||||||||||||||||||||  ||||||||||||| |||| |||||| | |    
T  34423111 ggacttctaaagaatctgtttcgcaaataactcgttgcataaagttgctgattaccaacatcaaaccatggtaaaccccaaatagctcatcaaaaagcgc 34423012  T
Q  225 atc---tccccctcactagaagagaatcctgctatccaat 261  Q
    |||   | ||||||  |||||||||| || ||||||||||    
T  34423011 atcccatgcccctcgttagaagagaaaccagctatccaat 34422972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 1274126 - 1274037
Alignment:
Q  175 attaccaacatcaaaccataataaaccccaaataactcagcaaaaaacacat----ctccccctcactagaagagaatcctgctatccaa 260  Q
    |||||||||||||||||||  ||||| ||||||| ||||||||||| | |||    || ||||||| ||||||||| ||| |||||||||    
T  1274126 attaccaacatcaaaccatggtaaactccaaatagctcagcaaaaagcgcatacccctgcccctcattagaagagattccagctatccaa 1274037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 1275838 - 1275786
Alignment:
Q  23 tggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa 75  Q
    |||||| ||| ||||| ||||||||||||||| |||||| |||||||||||||    
T  1275838 tggaaaaaaacgttagaaatatgctcctttaacccaaaaatcttcaccaacaa 1275786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 24565702 - 24565731
Alignment:
Q  25 gaaagaaatgttaggaatatgctcctttaa 54  Q
    ||||||||||||||||||||||||||||||    
T  24565702 gaaagaaatgttaggaatatgctcctttaa 24565731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 24 - 206
Target Start/End: Complemental strand, 6103000 - 6102818
Alignment:
Q  24 ggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtgctctcgacgttgaagaagatg 122  Q
    ||||||||||||||| ||||||||||||  |||||||  | ||||||||||| ||||||||| ||| |||||| ||||| ||| || |||||| ||| ||    
T  6103000 ggaaagaaatgttagaaatatgctccttcgaaccaaagattttcaccaacaaagaagtgtatgcatgcatatgcgagtgatctggatgttgaataaggtg 6102901  T
Q  123 ggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaa 206  Q
      | ||||||||| || | ||||  ||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||| |||||    
T  6102900 aag-acttctaaataatctatcttgcaaataacctgttgaatagcgtttttgattaccaacatccaaccataataaacaccaaa 6102818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 21688089 - 21688184
Alignment:
Q  7 ctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtg 101  Q
    |||||||| || ||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||| ||||||  ||||||| |||||| |||||    
T  21688089 ctctctaaacacatgttggaaataaatgttagggatatgctcctttaaaccaaaaatcttcaccaacaaagaagcatatacatgcatatgagagtg 21688184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 24274886 - 24274953
Alignment:
Q  5 ccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaa 72  Q
    ||||||| ||||| ||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  24274886 ccctctcgaagcacatgttggaaagaaatgttacgaatatgctcctttaacccaaaaatcttcaccaa 24274953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 28145295 - 28145456
Alignment:
Q  23 tggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtgctctcgacgttgaagaagat 121  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| || || || |||||||||||| |||||  ||||| | | ||  ||||||||||     
T  28145295 tggaaagaaatgttaggaatatgctcctttaatccaaaaatcttcgccgacaaaaaagtgtatacatgcatattagagtgatttggatcttgaagaagac 28145394  T
Q  122 gggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaaca 184  Q
     | | |||||||||  | |  | ||||||||||| || |||||| | ||||||||||||||||    
T  28145395 agagaacttctaaa-tatctgtttcacaaataacttgttgaataaatttgttgattaccaaca 28145456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 205
Target Start/End: Complemental strand, 41749238 - 41749123
Alignment:
Q  90 catatgtgagtgctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaa 189  Q
    |||||| |||||||| ||| |||||||||||||||| |||| | |||||    |||| ||||||||  | |||||||||||||| ||||||||||  ||     
T  41749238 catatgagagtgctcccgatgttgaagaagatggggaactttttaagaatttgtctcgcaaataacgagttgaatagagttgttaattaccaacacgaac 41749139  T
Q  190 ccataataaaccccaa 205  Q
    |||| |||||||||||    
T  41749138 ccatgataaaccccaa 41749123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 35774457 - 35774524
Alignment:
Q  5 ccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaa 72  Q
    |||||| ||| |||||| |||||||||||||||| ||||||||| |||||| ||||  ||||||||||    
T  35774457 ccctctttaatcatatgttggaaagaaatgttagcaatatgctcatttaaatcaaagatcttcaccaa 35774524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 138
Target Start/End: Original strand, 38260919 - 38261026
Alignment:
Q  32 atgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtgctctcgacgttgaagaagatgggggactt 130  Q
    ||||||| ||||||||||||||| || ||| ||||||  ||| |||||| |||||||| |||||||||||| |   || |||||||||||| | ||||||    
T  38260919 atgttagaaatatgctcctttaacccgaaaatcttcaataacaaagaagcgtatacatgcatatgtgagtgattcggatgttgaagaagattgaggactt 38261018  T
Q  131 ctaaagaa 138  Q
    ||| ||||    
T  38261019 ctagagaa 38261026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 7 - 220
Target Start/End: Complemental strand, 106457 - 106243
Alignment:
Q  7 ctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtgctct 105  Q
    ||||| ||||| ||| ||||||||||||||| |||||||||||||||| | |||| ||||||||||| |||||| | | ||||  ||||| ||||| |||    
T  106457 ctctcgaagcacatgttggaaagaaatgttacgaatatgctcctttaacctaaaaatcttcaccaacaaagaagcgcacacatgaatatgagagtgatct 106358  T
Q  106 cgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaa 205  Q
     ||  ||||||||||  |  ||||||||||||| |  | || ||||||||    |||||||||||| ||||||||||||| |||||||  ||||| ||||    
T  106357 ggatcttgaagaagacagaagacttctaaagaatctgtttcgcaaataactcattgaatagagttgctgattaccaacattaaaccatggtaaacgccaa 106258  T
Q  206 ataactcagcaaaaa 220  Q
    ||| |||| ||||||    
T  106257 atagctcaacaaaaa 106243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 32454800 - 32454992
Alignment:
Q  28 agaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtgctctcgacgttgaagaagatggggg 126  Q
    |||||||||||||||||||||||||||||||||  | ||||||||| ||||||||||| ||| |||||| ||||| ||  || ||||||||||  || ||    
T  32454800 agaaatgttaggaatatgctcctttaaaccaaagattttcaccaacaaagaagtgtatgcatgcatatgcgagtggtccagatgttgaagaaggcggagg 32454899  T
Q  127 acttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataactcagcaaaa 219  Q
    |||| || |||| | ||||   ||||||| || |||||||||||  | | |||||||| |||||||| |||||  ||||| | ||||||||||    
T  32454900 acttgtagagaatctatcttgtaaataacatgttgaatagagtttcttactaccaacaccaaaccatgataaataccaaagagctcagcaaaa 32454992  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 6944867 - 6944606
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtg 101  Q
    ||||||||| ||||| ||| ||||||||||||| | ||| ||||| |||||| |||||| ||||||||||| |||| |  ||||||| |||||| |||||    
T  6944867 tgccctctcgaagcacatgttggaaagaaatgtcacgaacatgcttctttaacccaaaaatcttcaccaacaaagaggcatatacatgcatatgagagtg 6944768  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     ||| ||  ||||||||||  |  ||||||||||| |    | || ||||||||  | ||| |||||||||||||| |||||||||||||||  |||| |    
T  6944767 atctggatcttgaagaagacagatgacttctaaag-atttgtttcgcaaataactcgttgagtagagttgttgattgccaacatcaaaccatggtaaa-c 6944670  T
Q  202 ccaaataactcagcaaaaaacacatc----tccccctcactagaagagaatcctgctatccaat 261  Q
    ||||||| ||| ||||||| ||||||    | ||||||| ||||||||||||| || |||||||    
T  6944669 ccaaatagctcggcaaaaagcacatccccttgcccctcattagaagagaatccagccatccaat 6944606  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 4421725 - 4421637
Alignment:
Q  19 atgatggaaagaaatgttaggaatatgctcctttaaaccaaa---attcttcaccaac-aagaagtgtatacatacatatgtgagtgct 103  Q
    ||||| |||| |||||||||||| ||||| ||||||||||||   |||||||| |||| |||||| |||||||| ||||||||||||||    
T  4421725 atgatagaaataaatgttaggaacatgcttctttaaaccaaaaatattcttcagcaacaaagaagcgtatacatgcatatgtgagtgct 4421637  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 1904693 - 1904743
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctccttta 53  Q
    ||||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  1904693 tgccctctcaaagcacatgttggaaagaaatgttacgaatatgctccttta 1904743  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 36133176 - 36133242
Alignment:
Q  149 aaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaataactcagc 215  Q
    ||||||| || |||||| |||||||||| |||||||||||| ||| |||||| | |||| |||||||    
T  36133176 aaataacttgttgaatatagttgttgatgaccaacatcaaatcatgataaacacgaaatcactcagc 36133242  T

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Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 33373389 - 33373591
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa-gaagtgtatacatacatatgtgagtg 101  Q
    ||||||||||||||| | | |||||||||||||||| |||||| |||||||||  |||| |||| |||| ||| |||   ||||||| |||||| || ||    
T  33373389 tgccctctctaagcacacgttggaaagaaatgttagaaatatgttcctttaaatgaaaaatcttaaccaccaaagaatcatatacatgcatatgcgaatg 33373488  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     |    | |||||||||||  |  ||||| ||||||| | || |||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||     
T  33373489 attcaaatgttgaagaagaatgaagacttttaaagaatc-atttcacaaataacctgatgaatagagttgttgatgactaacatcaaaccatgataaact 33373587  T
Q  202 ccaa 205  Q
    ||||    
T  33373588 ccaa 33373591  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 35147874 - 35148098
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtg 101  Q
    |||||||| |||||| ||| |||||| ||||||||||||||||||| |||||||||||| | || || ||| ||||||  ||||||| ||||||||||||    
T  35147874 tgccctctttaagcacatgttggaaataaatgttaggaatatgctcatttaaaccaaaaatgtttactaacaaagaagcatatacatgcatatgtgagtg 35147973  T
Q  102 ctctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaacc 201  Q
     ||  || ||| || ||||||| |||||| |||||||    |||  ||||||||  | ||||||   ||||||||| |||||||||||   |  ||||||    
T  35147974 atccagatgttaaaaaagatggaggacttttaaagaatttgtcttgcaaataactcgttgaataacattgttgattgccaacatcaaa-tttggtaaacc 35148072  T
Q  202 ccaaataactcagcaaaaaacacatc 227  Q
     |||||| ||||||||||||| ||||    
T  35148073 tcaaatagctcagcaaaaaacgcatc 35148098  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 31653219 - 31653404
Alignment:
Q  6 cctctctaagcatatgatggaaagaaatgttagga-atatgctcctttaaaccaaaattcttcaccaac-aagaagtgtatacatacatatgtgagtgct 103  Q
    |||||||||||| ||| |||||||||||||||||| |||||||| ||||||| |||| ||||||||||| || ||| ||    | ||||||||||||  |    
T  31653219 cctctctaagcacatgttggaaagaaatgttaggatatatgctcatttaaactaaaaatcttcaccaacaaaaaagcgt----aaacatatgtgagtaat 31653314  T
Q  104 ctcgacgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccat 193  Q
    |  || |||| | |||||||  |||||||| ||||    |||| ||||||||  | | ||||||||||||||||||||||||||||||||    
T  31653315 ccggatgttggaaaagatggaagacttctacagaatatgtctcgcaaataactcgttaaatagagttgttgattaccaacatcaaaccat 31653404  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 35892197 - 35892269
Alignment:
Q  3 tgccctctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaacaa 75  Q
    |||||||||  |||| ||| ||||||||||||||| |||||||||||||||| |||||| || ||||||||||    
T  35892197 tgccctctcggagcacatgttggaaagaaatgttacgaatatgctcctttaacccaaaaatcatcaccaacaa 35892269  T

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Target: scaffold0007 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 244045 - 243841
Alignment:
Q  9 ctctaagcatatgatggaaagaaatgttaggaatatgctcctttaaaccaaaattcttcaccaa-caagaagtgtatacatacatatgtgagtgctctcg 107  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||||||||||   |||| |||  |||||| ||        |||||||| |||||       
T  244045 ctctaagcacatgatggaaagaaatgttatgaatattctcctttaaaccaaaaaatttcatcaataaagaagcgt--------atatgtgactgctccga 243954  T
Q  108 acgttgaagaagatgggggacttctaaagaacccatctcacaaataacctgctgaatagagttgttgattaccaacatcaaaccataataaaccccaaat 207  Q
    | ||||||||||| |  || || ||||||||    |||| |||||||| |  |||||||||||||||||||||||| |||||||||  |||| |||||||    
T  243953 atgttgaagaagacgaaggtctactaaagaatttgtctcgcaaataactttttgaatagagttgttgattaccaacgtcaaaccatggtaaatcccaaat 243854  T
Q  208 aactcagcaaaaa 220  Q
    | |||| ||||||    
T  243853 acctcaacaaaaa 243841  T

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