View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_55 (Length: 278)
Name: NF10579_low_55
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 35068528 - 35068785
Alignment:
| Q |
18 |
aaaggcagcaagctgtgacaaggaataagaaaaatcaaattgaaaaagataacccatttgaatcattttggtgtgttttgatggtacaacatatttaata |
117 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068528 |
aaaggcagcaagttgtgacaaggaataagaaaaatcaaattgaaaaagataacccatttgaatcattttggtgtgttttgatggtacaacatatttaata |
35068627 |
T |
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| Q |
118 |
aaacaggatttggacaggtaagtctatctcctagcagtgtatatttgaagaataacacttaaaaattaaaatataaacatacaagggaaatggtggtcaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068628 |
aaacaggatttggacaggtaagtctatctcctagcagtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaa |
35068727 |
T |
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| Q |
218 |
gaaaaatggtaattcaaatgagaaaaacaagtatttgtagctgagcagtatttttcat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35068728 |
gaaaaatggtaattcaaatgagaaaaacaagtatttgtagctgagcagtatttttcat |
35068785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 35052609 - 35052866
Alignment:
| Q |
18 |
aaaggcagcaagctgtgacaaggaataagaaaaatcaaattgaaaaagataacccatttgaatcattttggtgtgttttgatggtacaacatatttaata |
117 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052609 |
aaaggcagcaaggtgtgacaaagaataagaaaaatcaaattgaaaaagataacctatttgaatcattttggtgtgttttgatggtacaacatatttaata |
35052708 |
T |
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| Q |
118 |
aaacaggatttggacaggtaagtctatctcctagcagtgtatatttgaagaataacacttaaaaattaaaatataaacatacaagggaaatggtggtcaa |
217 |
Q |
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||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052709 |
aaacaggatttagacaggtaagtctatctcatagcggtgtatatttgaagagtaacacttaaaaattaaaatataaacatacaagggaaatggtggtcaa |
35052808 |
T |
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| Q |
218 |
gaaaaatggtaattcaaatgagaaaaacaagtatttgtagctgagcagtatttttcat |
275 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35052809 |
gaaaaatggtaattcaaatgagaaaaacaagcatttgtagctgagcagtatttttcat |
35052866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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