View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_56 (Length: 274)
Name: NF10579_low_56
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 983009 - 983257
Alignment:
| Q |
16 |
gtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcgtgaactgaactgctatggtaaattaattatatagtacaagtttgtacaagaaaaa |
115 |
Q |
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| T |
983009 |
gtgtgaactgaattggtatggtaaattaatgagtttatgcgtgcatgaactgaactgctatggtaaattaataatatagtacaagtttgtacaagaaaaa |
983108 |
T |
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| Q |
116 |
atatagtacaatttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtct |
215 |
Q |
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| T |
983109 |
atatagtacagtttaaacatttgctacaaaataaagtatataggtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtct |
983208 |
T |
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| Q |
216 |
ttctttttaaagcatcttgtgtcttggtcatgcattcaaatttcctatg |
264 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
983209 |
ttctttttaaagtatcttgtgtcttggtcatgcattcaaatttcctatg |
983257 |
T |
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Back To:
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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 159 - 266
Target Start/End: Original strand, 40413224 - 40413331
Alignment:
| Q |
159 |
gtattttatgtggcaaacagttgatgatgtaaatggtagaagatattttaagggtctttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
258 |
Q |
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||||| ||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40413224 |
gtattgtatatgtcaaacagttgatgatgtaaatggtagaagatatttcgagggtatttctttttaaagcatcttgtgtcttggtcatgcattcaaattt |
40413323 |
T |
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| Q |
259 |
cctatgct |
266 |
Q |
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| T |
40413324 |
cctttgct |
40413331 |
T |
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