View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_58 (Length: 270)
Name: NF10579_low_58
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_58 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 38626138 - 38625898
Alignment:
| Q |
17 |
aggaacaaccctttaaaaaacaaataaaataagattgaaggccaataggtagttacaggtttacaacatctattttcacatccaggtcaacaatgaaaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38626138 |
aggaacaaccctttaaaaaacaaataaaataagatggaaggccaatagatagttacaggtttacaacatctattttcacatccaggtcaacaatgaaaaa |
38626039 |
T |
|
| Q |
117 |
caaattaaaccacaattcccctgctaccttcactttccaaggatatagttttttctttgaaacacgaattccaacaccataagaaaaagttactaaagta |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38626038 |
caaattaaaccacaagtcccctgctaccttcactttccaaggatatagttttttctttgaaacacgaattccaacaccataagaaaaagttactaaagta |
38625939 |
T |
|
| Q |
217 |
agactaacagaacaaaaacataactagcattacacacctct |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38625938 |
agactaacagaacaaaaacataactagcattacacacctct |
38625898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 67 - 257
Target Start/End: Complemental strand, 38651133 - 38650941
Alignment:
| Q |
67 |
agttacaggtttacaacatctattttcacatccaggtcaacaatgaaaaacaaattaaaccacaattcccctgctaccttcactttccaaggatatagtt |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||| |
|
|
| T |
38651133 |
agttacaggtttacaacatctattttcacatgcaggtcaacaatgaaaaacaaattaaaccacaattctactaccacctccactttccaaggatatagtt |
38651034 |
T |
|
| Q |
167 |
ttttctttgaaacacgaattcc--aacaccataagaaaaagttactaaagtaagactaacagaacaaaaacataactagcattacacacctct |
257 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38651033 |
ttttctttgaaacacaaattcccacacaccataagaaaaagttactatagtaagactaacagaacaaaaccattactagcattacacacctct |
38650941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University