View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10579_low_59 (Length: 268)

Name: NF10579_low_59
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10579_low_59
NF10579_low_59
[»] chr4 (7 HSPs)
chr4 (5-151)||(46971884-46972030)
chr4 (187-252)||(46971815-46971881)
chr4 (77-183)||(6273944-6274050)
chr4 (66-125)||(20743289-20743348)
chr4 (48-131)||(24343478-24343561)
chr4 (78-131)||(3144657-3144710)
chr4 (75-119)||(32910549-32910593)
[»] chr5 (7 HSPs)
chr5 (48-125)||(42469192-42469269)
chr5 (48-118)||(36642780-36642850)
chr5 (75-123)||(2577193-2577241)
chr5 (76-131)||(43554520-43554575)
chr5 (69-150)||(18607082-18607164)
chr5 (48-97)||(19820433-19820482)
chr5 (75-131)||(39696004-39696060)
[»] chr6 (8 HSPs)
chr6 (48-131)||(6389714-6389797)
chr6 (76-131)||(12086350-12086405)
chr6 (72-131)||(34446560-34446619)
chr6 (51-119)||(5732527-5732595)
chr6 (48-150)||(10294078-10294181)
chr6 (49-107)||(9027150-9027208)
chr6 (77-131)||(12235524-12235578)
chr6 (80-125)||(26247429-26247474)
[»] chr8 (6 HSPs)
chr8 (75-131)||(35431145-35431201)
chr8 (76-131)||(1676711-1676766)
chr8 (75-185)||(13009444-13009554)
chr8 (48-131)||(39820400-39820483)
chr8 (50-119)||(20873042-20873111)
chr8 (75-131)||(40063949-40064005)
[»] scaffold0199 (1 HSPs)
scaffold0199 (76-131)||(1948-2003)
[»] chr3 (6 HSPs)
chr3 (48-107)||(24205070-24205129)
chr3 (75-128)||(25074787-25074840)
chr3 (75-131)||(15864831-15864887)
chr3 (84-131)||(3730170-3730217)
chr3 (76-131)||(34189426-34189481)
chr3 (75-131)||(8903430-8903485)
[»] chr2 (6 HSPs)
chr2 (48-123)||(10535772-10535847)
chr2 (48-131)||(23354657-23354740)
chr2 (83-130)||(24011042-24011089)
chr2 (77-125)||(12748684-12748732)
chr2 (75-131)||(25544479-25544535)
chr2 (66-150)||(37986768-37986847)
[»] chr7 (5 HSPs)
chr7 (51-123)||(4017807-4017879)
chr7 (48-107)||(43249964-43250023)
chr7 (76-131)||(23751899-23751954)
chr7 (76-125)||(23930218-23930267)
chr7 (75-131)||(29812669-29812725)
[»] chr1 (4 HSPs)
chr1 (77-125)||(42004958-42005006)
chr1 (75-125)||(6573987-6574037)
chr1 (48-125)||(398776-398853)
chr1 (78-131)||(6936405-6936458)
[»] scaffold0007 (1 HSPs)
scaffold0007 (48-107)||(225297-225356)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 46972030 - 46971884
Alignment:
Q  5 agagagatgaaggtttaacctatgaagcatggacccaaacacaaccggacacgacacggatactgatactccgacacggataataaattgagataatgac 104  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  46972030 agagaaatgaaggtttaacctatgaagcatggacccaaacacaatcggacatgacacggatactgatactccgacacggataataatttgagataatgac 46971931  T
Q  105 atattttagtgtaatcataggcgtcgtatcgtgttggtgtcagacat 151  Q
    |||||||| ||| |||||||| |||||||||| ||||| ||||||||    
T  46971930 atattttactgttatcataggtgtcgtatcgttttggtatcagacat 46971884  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 46971881 - 46971815
Alignment:
Q  187 aagaataatgtttgtg-ttcatagggtttaactaagcacatagtgttaaactgttttttatcttttc 252  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46971881 aagaataatgtttgtgcttcatagggtttaactaagcacatagtgttaaactgttttttatcttttc 46971815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 6273944 - 6274050
Alignment:
Q  77 gacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatc-gtgttggtgtcagacattaacgcatgtctgaccacaggaca 175  Q
    ||||| || ||||| |||||| ||||| ||| ||||||||||| |||| |||||| || |||| ||||||||||||  ||||||||| || |||| ||||    
T  6273944 gacacagacaataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgacgcatgtccga-cacaagaca 6274042  T
Q  176 cgcctaat 183  Q
    ||||||||    
T  6274043 cgcctaat 6274050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 20743348 - 20743289
Alignment:
Q  66 actgatactccgacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    ||||| || |||||||||||||||| |||||| ||||||||| || ||||||||||||||    
T  20743348 actgacacgccgacacggataataatttgagaaaatgacataattcagtgtaatcatagg 20743289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 24343478 - 24343561
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||||||||||||  | || || |||||||||||||||| |||||| ||| ||||| || |||||||| ||||| |||||    
T  24343478 accggacacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattataggtgtcgt 24343561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 3144710 - 3144657
Alignment:
Q  78 acacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||||||||| || ||| ||||| ||| ||||||||||||||||| |||||    
T  3144710 acacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgt 3144657  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 32910549 - 32910593
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaat 119  Q
    |||||||||||||||| |||||| ||||||||| || ||||||||    
T  32910549 ccgacacggataataatttgagaaaatgacataattcagtgtaat 32910593  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 42469192 - 42469269
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    |||| |||||||||||||| ||| || |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42469192 accgaacacgacacggataatgacacgccgacacggataataatttgagaaaatgacatattttagtgtaatcatagg 42469269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 36642850 - 36642780
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaa 118  Q
    ||||||||||||||||| ||||| || ||||||| | |||||| |||| | | ||||||||||||||||||    
T  36642850 accggacacgacacggacactgacacgccgacacagttaataatttgaaaaagtgacatattttagtgtaa 36642780  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 2577241 - 2577193
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcata 123  Q
    ||||||| |||||||| |||||| ||||||||| |||||||||||||||    
T  2577241 ccgacaccgataataatttgagaaaatgacataatttagtgtaatcata 2577193  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 43554520 - 43554575
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||| ||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  43554520 cgacacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 43554575  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 18607164 - 18607082
Alignment:
Q  69 gatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatc-gtgttggtgtcagaca 150  Q
    ||||| |||||| ||||||||| |||||| ||| ||||| || | |||||||||||| ||||| || ||||||||||| ||||    
T  18607164 gatacaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttggtgtccgaca 18607082  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 19820482 - 19820433
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgaga 97  Q
    ||||||||||||||||| ||||| |||||||||| | |||||| ||||||    
T  19820482 accggacacgacacggacactgacactccgacaccgctaataatttgaga 19820433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 39696060 - 39696004
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||| || ||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  39696060 ccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 39696004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 6389714 - 6389797
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||||||||||||| ||| | || |||||||||||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  6389714 accggacacgacacggacactcacacgccgacacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 6389797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 12086405 - 12086350
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||||||||||| |||||||||||||||| || ||| |||||||||| |||||    
T  12086405 cgacacggataataatttgagataatgacataattcagtttaatcataggtgtcgt 12086350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 34446560 - 34446619
Alignment:
Q  72 actccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||| |||||||||||||| |||||| ||||||||| || |||||||||||||| |||||    
T  34446560 actctgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgt 34446619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 5732595 - 5732527
Alignment:
Q  51 ggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaat 119  Q
    |||||||||| ||| ||||| || ||||||| | |||||| |||||| ||| |||||||||||||||||    
T  5732595 ggacacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaat 5732527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 10294078 - 10294181
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtc-gtatcgtgttggtgtca 146  Q
    ||||||||||||||||||||||| |  |||| || | |||||| ||||||||||  ||||||| | |||||| ||| | ||| || |||||||||||||     
T  10294078 accggacacgacacggatactgacatgccgataccgctaataatttgagataatcgcatatttcaatgtaattatatgtgtcggtgtcgtgttggtgtcg 10294177  T
Q  147 gaca 150  Q
    ||||    
T  10294178 gaca 10294181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 9027150 - 9027208
Alignment:
Q  49 ccggacacgacacggatactgatactccgacacggataataaattgagataatgacata 107  Q
    |||||||||||||||| ||||| || ||||||| | |||||| |||||||||| |||||    
T  9027150 ccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacata 9027208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 12235578 - 12235524
Alignment:
Q  77 gacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||||||||| | |||| ||||||||| || |||||||||||||| |||||    
T  12235578 gacacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgt 12235524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 26247429 - 26247474
Alignment:
Q  80 acggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    ||||||||||| || ||| |||||||||||||||| ||||||||||    
T  26247429 acggataataatttaagaaaatgacatattttagtataatcatagg 26247474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 35431201 - 35431145
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  35431201 ccgaaacggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgt 35431145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 1676711 - 1676766
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||    
T  1676711 cgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgt 1676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 13009554 - 13009444
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatc-gtgttggtgtcagacattaacgcatgtctgaccacagga 173  Q
    |||||||||||||||| |||||| ||  | ||| ||||||||||||||| | ||||| || |||| |||||||||||   |||| |||| || ||| |||    
T  13009554 ccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgacgcctgtccga-cacggga 13009456  T
Q  174 cacgcctaatcc 185  Q
    ||||||||||||    
T  13009455 cacgcctaatcc 13009444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 39820400 - 39820483
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||||||||| || || || || | ||| || ||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  39820400 accggacacgacacagacaccgacacgctgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 39820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 20873042 - 20873111
Alignment:
Q  50 cggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaat 119  Q
    ||||||||||||||| ||||| || ||||||  |||||||| |||| | ||| ||||| |||||||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaat 20873111  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 40063949 - 40064005
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||  ||||||| |||||| ||||||||| || | ||||||||||||||||||    
T  40063949 ccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgt 40064005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 1948 - 2003
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||||||||||| ||| || ||||||||||||||||||||||||||| |||||    
T  1948 cgacacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgt 2003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 24205129 - 24205070
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacata 107  Q
    ||||||||||||||||| ||||| || |||||||||||||||| |||||| |||||||||    
T  24205129 accggacacgacacggacactgacacgccgacacggataataatttgagaaaatgacata 24205070  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 25074787 - 25074840
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgt 128  Q
    ||||||| |||||||| |||||| ||||||||| || |||||||||||||||||    
T  25074787 ccgacaccgataataatttgagaaaatgacataattgagtgtaatcataggcgt 25074840  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 15864831 - 15864887
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||||||||||| |||| | ||||| ||| ||||||||||||||||| |||||    
T  15864831 ccgacacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgt 15864887  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 131
Target Start/End: Complemental strand, 3730217 - 3730170
Alignment:
Q  84 ataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||| |||||||||||||||| || |||||||||||||| |||||    
T  3730217 ataataatttgagataatgacataattcagtgtaatcataggtgtcgt 3730170  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 34189426 - 34189481
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||| |||||||| |||||| |||||||||||| ||||||||| |||| |||||    
T  34189426 cgacacagataataatttgagaaaatgacatatttcagtgtaatcgtaggtgtcgt 34189481  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 8903430 - 8903485
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||||||||||  |||||| ||||||||| ||||||||||| ||||| |||||    
T  8903430 ccgacacggataatattttgagaaaatgacata-tttagtgtaattataggtgtcgt 8903485  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 10535847 - 10535772
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcata 123  Q
    |||| ||||||||| |||||| |||| ||||||| |||||||| |||||| ||||||||| || ||||||||||||    
T  10535847 accgtacacgacacagatactaatacgccgacaccgataataatttgagaaaatgacataattcagtgtaatcata 10535772  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 23354740 - 23354657
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||| |||||||| || || |  | ||||| |||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  23354740 accggacatgacacggacaccgacatgctgacacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 23354657  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 24011042 - 24011089
Alignment:
Q  83 gataataaattgagataatgacatattttagtgtaatcataggcgtcg 130  Q
    |||||||| |||||| ||||||||| ||||||||||||||||| ||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcg 24011089  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 12748684 - 12748732
Alignment:
Q  77 gacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    |||| ||||||||| |||||| ||||||||| || ||||||||||||||    
T  12748684 gacatggataataatttgagaaaatgacatagttcagtgtaatcatagg 12748732  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Original strand, 25544479 - 25544535
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||| ||||||| |||||| ||||| ||| || |||||||||||||| |||||    
T  25544479 ccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgt 25544535  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 37986768 - 37986847
Alignment:
Q  66 actgatactccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgtatcgtgttggtgtcagaca 150  Q
    ||||| || ||||||| |||||||| |||| | ||||| |||||| |||||||||||||     |||||||||||||||| ||||    
T  37986768 actgacacgccgacacagataataatttgaaaaaatgatatatttgagtgtaatcatag-----gtatcgtgttggtgtcggaca 37986847  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 4017879 - 4017807
Alignment:
Q  51 ggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcata 123  Q
    |||||||||||||| || || || |||||||||||||||| |||||| || || ||| |||||||||||||||    
T  4017879 ggacacgacacggacaccgacacgccgacacggataataatttgagaaaacgatataatttagtgtaatcata 4017807  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 43249964 - 43250023
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacata 107  Q
    |||||||| |||||||| ||||| || |||||||||||||||| |||||| |||||||||    
T  43249964 accggacaagacacggacactgacacgccgacacggataataatttgagaaaatgacata 43250023  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 23751899 - 23751954
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||||||||||||| |||| | ||||| ||| ||||||||||||||||| |||||    
T  23751899 cgacacggataataatttgataaaatgatataatttagtgtaatcataggtgtcgt 23751954  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 23930218 - 23930267
Alignment:
Q  76 cgacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    ||||||||||| ||| |||||| ||||||||| || ||||||||||||||    
T  23930218 cgacacggatagtaatttgagaaaatgacataattcagtgtaatcatagg 23930267  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 29812725 - 29812669
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    ||||| || ||||||| |||||| ||||| ||| ||||||||||||||||| |||||    
T  29812725 ccgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgt 29812669  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 42005006 - 42004958
Alignment:
Q  77 gacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcatagg 42004958  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Original strand, 6573987 - 6574037
Alignment:
Q  75 ccgacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    ||||||||||| |||| |||||| ||||| ||| |||||||||||||||||    
T  6573987 ccgacacggatgataatttgagacaatgatataatttagtgtaatcatagg 6574037  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 398853 - 398776
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacatattttagtgtaatcatagg 125  Q
    ||||||||||||||||| ||||| || ||||||| | |||||| |||| | ||| ||||| || |||||||| |||||    
T  398853 accggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattatagg 398776  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 6936458 - 6936405
Alignment:
Q  78 acacggataataaattgagataatgacatattttagtgtaatcataggcgtcgt 131  Q
    |||||||||||||  ||||| ||||||||| || |||||||||||||| |||||    
T  6936458 acacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgt 6936405  T

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Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 225356 - 225297
Alignment:
Q  48 accggacacgacacggatactgatactccgacacggataataaattgagataatgacata 107  Q
    ||||||||||||||||| ||||| || ||||||| |||||||| |||||| |||||||||    
T  225356 accggacacgacacggacactgacacgccgacacagataataatttgagaaaatgacata 225297  T

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