View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10579_low_60 (Length: 262)
Name: NF10579_low_60
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_60 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 18191639 - 18191401
Alignment:
| Q |
13 |
atggacatcaatgccaaggtcatcaaatttcttcaatcataaccataagtctagggatcaaaagcttagaaggaatcacaaacatgcaaaagtggctcct |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191639 |
atggatatcaatgccaaggtcatcaaatttcttcaatcataaccataagtctagggatcaaaagcttagaaggaatcacaaacatgcaaaagtggctccc |
18191540 |
T |
|
| Q |
113 |
attcggatagaagtaagaaagatgagaaaacctactcttgtataaagctccttggccttttccaaatgagtagcttctagctttggatttctcttttcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191539 |
attcggatagaagtaagaaagatgagaaaacctactcttgtataaagctccttggccttttccaaatgagtagcttctagctttggatttctcttttcat |
18191440 |
T |
|
| Q |
213 |
tccgaactgcagcaaagtagttccagtttccctattcat |
251 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18191439 |
tccgaactgcagcgaagtagttccagtttccctattcat |
18191401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University