View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10579_low_67 (Length: 253)
Name: NF10579_low_67
Description: NF10579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10579_low_67 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 50183536 - 50183754
Alignment:
| Q |
25 |
gaaagcatgcatatattcgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatcaatatgtcaataatggatcaatcacctttcac |
124 |
Q |
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| T |
50183536 |
gaaagcatgcatatattcgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatcaatatgtcaataatggatcaatcacctttcac |
50183635 |
T |
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| Q |
125 |
gactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaatctcactctcagtgataagctcagggttttcaagagttcttcc |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50183636 |
gactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagccaatctcactctcagtgataagctcagggttttcaaaagttcttcc |
50183735 |
T |
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| Q |
225 |
tttgatcccagtgcctatg |
243 |
Q |
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| T |
50183736 |
tttgatcccagtgcctatg |
50183754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 29 - 243
Target Start/End: Complemental strand, 16298377 - 16298162
Alignment:
| Q |
29 |
gcatgcatatattcgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatcaatatgtcaataatggatcaatcacctttcacgact |
128 |
Q |
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|||||||||||| |||||||||| ||| |||| ||| | ||| || ||||||||||||||||| |||||||| |||||||| ||| ||| |||| |
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| T |
16298377 |
gcatgcatatataagtataatattataaggcat--caagactacacaaaaagagagatcaaatcaaaatgtcaat---ggatcaattaccattcgtgact |
16298283 |
T |
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| Q |
129 |
ccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaagcc------aatctcactctcagtgataagctcagggttttcaagagttctt |
222 |
Q |
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|||||||||||| |||||||||||||||| | | |||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||| |
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| T |
16298282 |
ccaagaggatccgtttcatcaagcattggaagtgttgctgaacttgaagccaatcccaatctcactctcagtgataagcttagggttttcaaaagctctt |
16298183 |
T |
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| Q |
223 |
cctttgatcccagtgcctatg |
243 |
Q |
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| |||||||||| |||||||| |
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| T |
16298182 |
catttgatcccaatgcctatg |
16298162 |
T |
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Back To:
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